Struct AlignOutputConfig 

pub struct AlignOutputConfig {
    pub export_long: bool,
    pub format: OutputFormat,
    pub max_qvalue: f64,
    pub export_decoys: bool,
    pub export_details: bool,
}

Output settings for the alignment + LFQ stage.

Fields

export_long: bool

Export the versioned long-format observation and extraction bundle.

format: OutputFormat

“tsv” or “parquet”

max_qvalue: f64

Only write matrix entries with q-value ≤ this threshold (1.0 = keep all)

export_decoys: bool

Write decoy_intensity_matrix.tsv (target-decoy decoy LFQ values). Has no effect when lfq.run_tdc = false.

export_details: bool

Write lfq_details.tsv — long-format file with one row per (feature, run, is_decoy) including scores, RT diff, observed mz/IM.

Trait Implementations

impl Clone for AlignOutputConfig

fn clone(&self) -> Self

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for AlignOutputConfig

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for AlignOutputConfig

fn default() -> Self

Returns the “default value” for a type.

impl<'de> Deserialize<'de> for AlignOutputConfig

where AlignOutputConfig: Default,

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Serialize for AlignOutputConfig

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.