Struct AlignmentConfig 

pub struct AlignmentConfig {
    pub reference_run: Option<String>,
    pub anchor_mass_ppm: f64,
    pub rt_anchor_window: f64,
    pub im_tolerance: f64,
    pub min_anchor_combined_score: f64,
    pub min_anchor_count: usize,
    pub rt_warp_bandwidth: f64,
    pub rt_warp_kind: WarpKind,
    pub rt_warp_ransac_thresh: f64,
}

Configuration for multi-run alignment.

Fields

reference_run: Option<String>

Explicit reference run name; None selects the highest-quality run.

anchor_mass_ppm: f64

PPM tolerance for finding anchor feature pairs

rt_anchor_window: f64

Normalised RT window [0, 1] for anchor matching (e.g. 0.05 = ±5% of gradient)

im_tolerance: f64

Ion mobility tolerance for anchor matching (1/K0 units)

min_anchor_combined_score: f64

Minimum combined_score (isotope × chromato cosine) for a feature to be eligible as an alignment anchor.

min_anchor_count: usize

Minimum anchor count required to fit a warp; falls back to identity if below

rt_warp_bandwidth: f64

Bandwidth for the sliding-window median (fraction of normalised RT range) used by the RANSAC warp’s inlier median piecewise-linear fit.

rt_warp_kind: WarpKind

Which warp model to fit. Only ransac (RANSAC-inlier piecewise warp) is supported.

rt_warp_ransac_thresh: f64

Inlier half-band for the RANSAC warp, in normalised RT units (0.01 ≈ 1.4 min on a 142-min gradient). An anchor is an inlier if its reference RT is within this distance of the consensus diagonal.

Trait Implementations

impl Clone for AlignmentConfig

fn clone(&self) -> Self

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for AlignmentConfig

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for AlignmentConfig

fn default() -> Self

Returns the “default value” for a type.

impl<'de> Deserialize<'de> for AlignmentConfig

where AlignmentConfig: Default,

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Serialize for AlignmentConfig

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.