Struct KothConfig 

pub struct KothConfig {
    pub file: FileConfig,
    pub hills: HillsConfig,
    pub hills_ms2: Option<HillsMs2Overrides>,
    pub features: FeaturesConfig,
    pub scoring: ScoringConfig,
    pub output: OutputConfig,
}

Fields

file: FileConfig

hills: HillsConfig

hills_ms2: Option<HillsMs2Overrides>

Optional per-field overrides for MS2 (DIA fragment) hill detection. Absent (None) ⇒ MS2 hills use [hills] verbatim (byte-identical to the pre-existing behavior). Present ⇒ MS2 hill detection inherits [hills] and applies only the fields set here. See KothConfig::ms2_hills.

features: FeaturesConfig

scoring: ScoringConfig

output: OutputConfig

Implementations

impl KothConfig

pub fn from_toml(path: &Path) -> Result<Self, Error>

pub fn to_toml_string(&self) -> Result<String, Error>

pub fn ms2_hills(&self) -> HillsConfig

Resolve the HillsConfig to use for MS2 (DIA fragment) hill detection.

When [hills_ms2] is absent this returns self.hills unchanged — the MS2 path is byte-for-byte identical to using [hills] directly. When present, MS2 hill detection inherits every [hills] value and overwrites only the fields set under [hills_ms2] (see HillsMs2Overrides).

Pipeline entry points (run_pipeline_with_ms2, run_pipeline_streaming, …) and the binary route MS2 detection through this method, so a single KothConfig drives MS1 and MS2 hill settings independently.

Trait Implementations

impl Clone for KothConfig

fn clone(&self) -> Self

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for KothConfig

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for KothConfig

fn default() -> Self

Returns the “default value” for a type.

impl<'de> Deserialize<'de> for KothConfig

where KothConfig: Default,

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Serialize for KothConfig

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.