Struct Chain 

pub struct Chain {
    pub variable: Vec<Arc<Germline>>,
    pub joining: Vec<Arc<Germline>>,
    pub c: Vec<Arc<Germline>>,
    pub a: Vec<Arc<Germline>>,
    pub d: Vec<Arc<Germline>>,
    pub e: Vec<Arc<Germline>>,
    pub g: Vec<Arc<Germline>>,
    pub m: Vec<Arc<Germline>>,
    pub o: Vec<Arc<Germline>>,
    pub t: Vec<Arc<Germline>>,
}

The intermediate representation for a chain

Fields

variable: Vec<Arc<Germline>>

All V/variable germlines

joining: Vec<Arc<Germline>>

All J/joining germlines

c: Vec<Arc<Germline>>

All C/constant germlines

a: Vec<Arc<Germline>>

All A constant germlines

d: Vec<Arc<Germline>>

All D constant germlines

e: Vec<Arc<Germline>>

All E constant germlines

g: Vec<Arc<Germline>>

All G constant germlines

m: Vec<Arc<Germline>>

All M constant germlines

o: Vec<Arc<Germline>>

All O constant germlines

t: Vec<Arc<Germline>>

All T constant germlines

Implementations

impl Chain

pub fn insert(&mut self, germline: Germline)

Panics

It panics when it inserts an allele it has already placed (has to be filtered and ranked before)

pub fn doc_row(&self) -> String

Create a row for use in the documentation of the numbers of different sequences available

impl Chain

pub fn iter( &self, ) -> impl DoubleEndedIterator<Item = (GeneType, &[Arc<Germline>])> + ExactSizeIterator + '_

Iterate over the genes

Trait Implementations

impl<'__de, __Context> BorrowDecode<'__de, __Context> for Chain

fn borrow_decode<__D: BorrowDecoder<'__de, Context = __Context>>( decoder: &mut __D, ) -> Result<Self, DecodeError>

Attempt to decode this type with the given BorrowDecode.

impl Debug for Chain

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<__Context> Decode<__Context> for Chain

fn decode<__D: Decoder<Context = __Context>>( decoder: &mut __D, ) -> Result<Self, DecodeError>

Attempt to decode this type with the given Decode.

impl Default for Chain

fn default() -> Chain

Returns the “default value” for a type.

impl<'de> Deserialize<'de> for Chain

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Encode for Chain

fn encode<__E: Encoder>(&self, encoder: &mut __E) -> Result<(), EncodeError>

Encode a given type.

impl<'a> IntoIterator for &'a Chain

type IntoIter = IntoIter<(GeneType, &'a [Arc<Germline>]), 10>

Which kind of iterator are we turning this into?

type Item = (GeneType, &'a [Arc<Germline>])

The type of the elements being iterated over.

fn into_iter(self) -> Self::IntoIter

Creates an iterator from a value.

impl<'a> IntoParallelIterator for &'a Chain

Available on crate feature rayon only.

type Iter = IntoIter<(GeneType, &'a [Arc<Germline>]), 10>

The parallel iterator type that will be created.

type Item = (GeneType, &'a [Arc<Germline>])

The type of item that the parallel iterator will produce.

fn into_par_iter(self) -> Self::Iter

Converts self into a parallel iterator.

impl Serialize for Chain

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.