Struct Fragment 

pub struct Fragment {
    pub bases: Vec<u8>,
    pub ref_positions: Vec<u32>,
    pub ref_start: u32,
    pub is_forward: bool,
    pub haplotype_index: usize,
}

A simulated fragment extracted from a haplotype.

Contains the fragment bases and reference coordinate mapping, plus metadata about the source haplotype and strand.

Fields

bases: Vec<u8>

Fragment bases in the forward orientation (5’ to 3’).

ref_positions: Vec<u32>

Reference position for each base in the fragment.

ref_start: u32

0-based reference start position of the fragment.

is_forward: bool

Whether the fragment is on the forward strand.

haplotype_index: usize

Index of the haplotype this fragment came from.

Trait Implementations

impl Debug for Fragment

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.