Module fragment 

Fragment extraction and read base generation.

Handles extracting genomic fragments from haplotypes, reverse-complement operations, adapter sequence appending for short fragments, and R1/R2 base extraction from fragments.

Structs

Fragment

A simulated fragment extracted from a haplotype.

Functions

extract_fragment

Extract a fragment from a haplotype at a given position and strand.

extract_read_bases

Extract read bases from a fragment, handling adapter sequences for short fragments.

reverse_complement

Reverse-complement a DNA sequence in place.