Enum ModString 

pub enum ModString {
    MapIds {
        args: StringMappingArgs,
        output: OutputArgs,
    },
    Network {
        args: StringNetworkArgs,
        output: OutputArgs,
    },
    Homology {
        args: StringHomologyArgs,
        output: OutputArgs,
    },
    Interactions {
        args: StringInteractionsArgs,
        output: OutputArgs,
    },
    Enrichment {
        args: StringFunctionalEnrichmentArgs,
        output: OutputArgs,
    },
    Annotations {
        args: StringFunctionalAnnotationArgs,
        output: OutputArgs,
    },
    PpiEnrichment {
        args: StringPpiEnrichmentArgs,
        output: OutputArgs,
    },
}

Variants

MapIds

Maps common protein names, synonyms and UniProt identifiers into STRING identifiers

Fields

args: StringMappingArgs

output: OutputArgs

Network

Retrieves the network interactions for your input protein(s) in various text based formats

Fields

args: StringNetworkArgs

output: OutputArgs

Homology

Retrieve the protein similarity scores between the input proteins

Fields

args: StringHomologyArgs

output: OutputArgs

Interactions

Gets all the STRING interaction partners of your proteins

Fields

args: StringInteractionsArgs

output: OutputArgs

Enrichment

Performs the enrichment analysis of your set of proteins for the Gene Ontology, KEGG pathways, UniProt Keywords, PubMed publications, Pfam, InterPro and SMART domains.

Fields

args: StringFunctionalEnrichmentArgs

output: OutputArgs

Annotations

Gets the functional annotation (Gene Ontology, UniProt Keywords, PFAM, INTERPRO and SMART domains) of your list of proteins.

Fields

args: StringFunctionalAnnotationArgs

output: OutputArgs

PpiEnrichment

Tests if your network has more interactions than expected

Fields

args: StringPpiEnrichmentArgs

output: OutputArgs

Trait Implementations

impl FromArgMatches for ModString

fn from_arg_matches(__clap_arg_matches: &ArgMatches) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn from_arg_matches_mut( __clap_arg_matches: &mut ArgMatches, ) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn update_from_arg_matches( &mut self, __clap_arg_matches: &ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.

fn update_from_arg_matches_mut<'b>( &mut self, __clap_arg_matches: &mut ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.

impl Subcommand for ModString

fn augment_subcommands<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate Self via FromArgMatches::from_arg_matches_mut

fn augment_subcommands_for_update<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate self via FromArgMatches::update_from_arg_matches_mut

fn has_subcommand(__clap_name: &str) -> bool

Test whether Self can parse a specific subcommand