Struct StringInteractionsArgs 

pub struct StringInteractionsArgs {
    pub identifiers: Vec<String>,
    pub species: usize,
    pub limit: Option<usize>,
    pub required_score: Option<f64>,
    pub network_type: StringNetworkType,
    pub caller_identity: String,
}

Gets all the STRING interaction partners of your proteins

Fields

identifiers: Vec<String>

List of genes to retrieve network for

species: usize

Species to retrieve network for (NCBI taxonomy ID)

limit: Option<usize>

limits the number of interaction partners retrieved per protein (most confident interactions come first) default set by the server (usually 10)

required_score: Option<f64>

threshold of significance to include a interaction, a number between 0 and 1000 (default depends on the network)

network_type: StringNetworkType

The type of network to retrieve

caller_identity: String

identifier of the caller to provide to the server

Implementations

impl StringInteractionsArgs

pub fn builder() -> StringInteractionsArgsBuilder

Create an instance of StringInteractionsArgs using the builder syntax

impl StringInteractionsArgs

pub fn build_post(&self) -> Value

Trait Implementations

impl Args for StringInteractionsArgs

fn group_id() -> Option<Id>

Report the ArgGroup::id for this set of arguments

fn augment_args<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate Self via FromArgMatches::from_arg_matches_mut

fn augment_args_for_update<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate self via FromArgMatches::update_from_arg_matches_mut

impl Clone for StringInteractionsArgs

fn clone(&self) -> StringInteractionsArgs

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl CommandFactory for StringInteractionsArgs

fn command<'b>() -> Command

Build a Command that can instantiate Self.

fn command_for_update<'b>() -> Command

Build a Command that can update self.

impl Debug for StringInteractionsArgs

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl FromArgMatches for StringInteractionsArgs

fn from_arg_matches(__clap_arg_matches: &ArgMatches) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn from_arg_matches_mut( __clap_arg_matches: &mut ArgMatches, ) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn update_from_arg_matches( &mut self, __clap_arg_matches: &ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.

fn update_from_arg_matches_mut( &mut self, __clap_arg_matches: &mut ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.

impl Parser for StringInteractionsArgs

fn parse() -> Self

Parse from std::env::args_os(), exit on error.

fn try_parse() -> Result<Self, Error>

Parse from std::env::args_os(), return Err on error.

fn parse_from<I, T>(itr: I) -> Self

where I: IntoIterator<Item = T>, T: Into<OsString> + Clone,

Parse from iterator, exit on error.

fn try_parse_from<I, T>(itr: I) -> Result<Self, Error>

where I: IntoIterator<Item = T>, T: Into<OsString> + Clone,

Parse from iterator, return Err on error.

fn update_from<I, T>(&mut self, itr: I)

where I: IntoIterator<Item = T>, T: Into<OsString> + Clone,

Update from iterator, exit on error.

fn try_update_from<I, T>(&mut self, itr: I) -> Result<(), Error>

where I: IntoIterator<Item = T>, T: Into<OsString> + Clone,

Update from iterator, return Err on error.