Crate gfa_reader

Structs

• Containment
  GFA containment line
• Edges
  GFA edge line
• Fragment
• Gap
• Gfa
  A representation of a GFA file (v1 + v2)
• Group
  Ordered and unordered groups v2.0
• Haplotype
  PanSN-spec haplotype
• Header
  GFA header line This line begins with an ‘H’
• Jump
• Link
  GFA link line
• NCEdge
  Graph edges
• NCGfa
  The graph contains of nodes, path and edges. NCGfa = NumericCompactGfa This is a compact graph representation of the GFA file.
• NCNode
  Graph nodes:
• NCPath
  Path features:
• OptElem
  Optional fields for GFA 1
• Pansn
  PanSN-spec path data structure
• Path
  GFA path line:
• Sample
• Segment
  GFA segment line
• Walk
  Path features:

Traits

• IsPath
  IsPath trait
• OptFields
  Trait for OptFields

Functions

• create_sort_numeric
  Create a numeric vector from a vector of strings
• vec_check_start
  Check if the vector starts at 1
• vec_is_compact
  Check if the vector is compact
• vec_is_digit
  Does this vector contain only digits