Struct Pansn

pub struct Pansn<'a, T: IsPath> {
    pub genomes: Vec<Sample<'a, T>>,
}

PanSN-spec path data structure

use gfa_reader::{Gfa, Pansn, Path};

let mut graph: Gfa<()> = Gfa::new();
graph.parse_gfa_file("data/size5.gfa", false);
let pansn: Pansn<Path> = Pansn::from_graph(&graph.paths, " ");
println!("{:?}", pansn);

PanSN-spec [sample_name][delim][haplotype_id][delim][contig_or_scaffold_name]

Fields

genomes: Vec<Sample<'a, T>>

Implementations

impl<'a, T: IsPath> Pansn<'a, T>

pub fn from_graph(paths: &'a Vec<T>, del: &str) -> Self

Create Pansn from a list of paths

pub fn get_haplo_path(&self) -> Vec<(String, Vec<&'a T>)>

pub fn get_path_genome(&self) -> Vec<(String, Vec<&'a T>)>

pub fn get_paths_direct(&self) -> Vec<(String, Vec<&'a T>)>

Trait Implementations

impl<'a, T: Clone + IsPath> Clone for Pansn<'a, T>

fn clone(&self) -> Pansn<'a, T>

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl<'a, T: Debug + IsPath> Debug for Pansn<'a, T>

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.