List of all items

Structs

• core::ChunkedIterator
• core::GenomicInterval
• core::GenomicPosition
• execution::AnnotatedVariant
• execution::AnnotationResult
• execution::BamExecution
• execution::BedExecution
• execution::FastqExecution
• execution::VcfExecution
• expression::CompiledAndFilter
• expression::CompiledNotFilter
• expression::CompiledOrFilter
• filtered_reader::FilteredReader
• filters::AcceptAll
• filters::AndFilter
• filters::NotFilter
• filters::OrFilter
• filters::RejectAll
• formats::bam::filters::AlignmentLengthFilter
• formats::bam::filters::BothMatesMappedFilter
• formats::bam::filters::ChromosomeFilter
• formats::bam::filters::MappedOnlyFilter
• formats::bam::filters::MappingQualityFilter
• formats::bam::filters::NoDuplicatesFilter
• formats::bam::filters::PairPositionFilter
• formats::bam::filters::PrimaryAlignmentFilter
• formats::bam::filters::ProperPairFilter
• formats::bam::filters::QcPassFilter
• formats::bam::filters::ReadLengthFilter
• formats::bam::filters::StrandFilter
• formats::bam::reader::BamHeader
• formats::bam::reader::BamReader
• formats::bam::reader::BamRecord
• formats::bam::reader::BamRecordIterator
• formats::bam::reader::RefSeq
• formats::bam::stats::BamStats
• formats::bed::filters::Bed12Filter
• formats::bed::filters::Bed6Filter
• formats::bed::filters::BlockCountFilter
• formats::bed::filters::ChromosomeFilter
• formats::bed::filters::LengthFilter
• formats::bed::filters::MinLengthFilter
• formats::bed::filters::MinScoreFilter
• formats::bed::filters::NonEmptyFilter
• formats::bed::filters::RegionFilter
• formats::bed::filters::ScoreFilter
• formats::bed::filters::StrandFilter
• formats::bed::reader::BedReader
• formats::bed::reader::BedRecord
• formats::bed::stats::BedStats
• formats::fasta::reader::FastaReader
• formats::fasta::reader::FastaRecord
• formats::fastq::filters::ComplexityFilter
• formats::fastq::filters::GCContentFilter
• formats::fastq::filters::HomopolymerFilter
• formats::fastq::filters::LengthFilter
• formats::fastq::filters::MinLengthFilter
• formats::fastq::filters::MinQualityFilter
• formats::fastq::filters::NContentFilter
• formats::fastq::filters::QualityFilter
• formats::fastq::reader::FastqHeader
• formats::fastq::reader::FastqReader
• formats::fastq::reader::FastqRecord
• formats::fastq::stats::BaseComposition
• formats::fastq::stats::FastqStats
• formats::gff::reader::GffHeader
• formats::gff::reader::GffReader
• formats::gff::reader::GffRecord
• formats::gff::stats::GffStats
• formats::sam::reader::SamHeader
• formats::sam::reader::SamReader
• formats::sam::reader::SamRecord
• formats::sam::stats::SamStats
• formats::vcf::annotated::AnnotatedVcfRecord
• formats::vcf::filters::BiAllelicFilter
• formats::vcf::filters::ChromosomeFilter
• formats::vcf::filters::DepthFilter
• formats::vcf::filters::IndelOnlyFilter
• formats::vcf::filters::MaxQualityFilter
• formats::vcf::filters::PassFilter
• formats::vcf::filters::QualityFilter
• formats::vcf::filters::RegionFilter
• formats::vcf::filters::SnpOnlyFilter
• formats::vcf::filters::TransitionOnlyFilter
• formats::vcf::filters::TransversionOnlyFilter
• formats::vcf::reader::AnnotatingIterator
• formats::vcf::reader::VcfHeader
• formats::vcf::reader::VcfReader
• formats::vcf::reader::VcfRecord
• formats::vcf::stats::GenotypeStats
• formats::vcf::stats::VcfStats
• interval::GenomicInterval
• interval::annotation::Annotation
• interval::annotation::AnnotationIndex
• interval::annotation::IntervalTree
• interval::annotation::IntervalTreeNode
• interval::annotation::MultiQueryResult
• io::CloudReader
• parallel::FileChunk
• parallel::ParallelConfig
• plan::LogicalPlan
• schema::ColumnDef
• schema::GenomicSchema
• stats::CategoryCounter
• stats::PercentileEstimator
• stats::RunningStats

Enums

• core::Strand
• error::Error
• execution::ExecutionResult
• expression::Expr
• expression::ScalarValue
• formats::bam::filters::PairPosition
• formats::bam::filters::Strand
• formats::bam::reader::CigarOp
• formats::bam::reader::TagValue
• formats::bed::filters::Strand
• formats::fastq::reader::QualityEncoding
• formats::vcf::stats::TransitionType
• formats::vcf::stats::VariantType
• io::Compression
• io::FileLocation
• plan::JoinType
• plan::PlanNode
• schema::DataType
• schema::FileFormat
• schema::GenomicType

Traits

• core::GenomicReader
• core::GenomicRecordIterator
• core::GenomicWriter
• expression::ExprToFilter
• filtered_reader::Filterable
• filters::PushdownFilter
• filters::RecordFilter
• parallel::Mergeable

Functions

• execution::execute
• expression::col
• expression::extract_f64
• expression::extract_i64
• expression::extract_string
• expression::extract_u32
• expression::extract_u64
• expression::extract_u8
• expression::extract_usize
• expression::lit
• formats::bam::block_parsing::scan_bgzf_blocks
• interval::annotation::multi_query
• parallel::calculate_chunks
• parallel::find_record_boundary
• parallel::get_thread_pool
• utils::gc_content
• utils::reverse_complement
• utils::validate_dna_sequence

Type Aliases

• error::Result