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BlastpAligner

gapsmith_align::blast

Struct BlastpAligner 

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pub struct BlastpAligner;

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impl BlastpAligner

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pub fn new() -> Self

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impl Aligner for BlastpAligner

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fn name(&self) -> &'static str

Short label printed in logs ("blast", "diamond", "mmseqs2", "tblastn", "precomputed").
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fn align( &self, query_fasta: &Path, target_fasta: &Path, opts: &AlignOpts, ) -> Result<Vec<Hit>, AlignError>

Align query_fasta against target_fasta. The target_fasta may be a protein or nucleotide file depending on the backend — check the impl’s docs.
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impl Default for BlastpAligner

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fn default() -> Self

Returns the “default value” for a type. Read more

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

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impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

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impl<T> From<T> for T

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fn from(t: T) -> T

Returns the argument unchanged.

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impl<T> Instrument for T

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fn instrument(self, span: Span) -> Instrumented<Self>

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impl<T, U> TryFrom<U> for T
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type Error = Infallible

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fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

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impl<T, U> TryInto<U> for T
where U: TryFrom<T>,

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type Error = <U as TryFrom<T>>::Error

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fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

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fn with_subscriber<S>(self, subscriber: S) -> WithDispatch<Self>
where S: Into<Dispatch>,

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