Expand description
BLAST+ aligners: blastp (protein-protein) and tblastn (protein query vs.
nucleotide database, translated in all 6 frames).
Shell-out target: makeblastdb + blastp / tblastn. Command template
mirrors src/gapseq_find.sh:585–589:
makeblastdb -in TARGET -dbtype prot -out orgdb
blastp -db orgdb -query QUERY -qcov_hsp_perc 75 -num_threads N
-outfmt "6 qseqid pident evalue bitscore qcovs stitle sstart send"tblastn differs only in -dbtype nucl and the search executable.