Struct fibertools_rs::cli::FootprintOptions

pub struct FootprintOptions {
    pub bam: String,
    pub bed: String,
    pub yaml: String,
    pub out: String,
}

Fields

bam: String

Indexed and aligned bam file with m6A and MSP calls

bed: String

BED file with the regions to footprint. Should all contain the same motif with proper strand information, and ideally be ChIP-seq peaks.

yaml: String

yaml describing the modules of the footprint

out: String

Output bam

Trait Implementations

impl Args for FootprintOptions

fn group_id() -> Option<Id>

Report the [ArgGroup::id][crate::ArgGroup::id] for this set of arguments

fn augment_args<'b>(__clap_app: Command) -> Command

Append to [Command] so it can instantiate Self.

fn augment_args_for_update<'b>(__clap_app: Command) -> Command

Append to [Command] so it can update self.

impl Debug for FootprintOptions

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl FromArgMatches for FootprintOptions

fn from_arg_matches(__clap_arg_matches: &ArgMatches) -> Result<Self, Error>

Instantiate Self from [ArgMatches], parsing the arguments as needed.

fn from_arg_matches_mut( __clap_arg_matches: &mut ArgMatches ) -> Result<Self, Error>

Instantiate Self from [ArgMatches], parsing the arguments as needed.

fn update_from_arg_matches( &mut self, __clap_arg_matches: &ArgMatches ) -> Result<(), Error>

Assign values from ArgMatches to self.

fn update_from_arg_matches_mut( &mut self, __clap_arg_matches: &mut ArgMatches ) -> Result<(), Error>

Assign values from ArgMatches to self.

impl PartialEq for FootprintOptions

fn eq(&self, other: &FootprintOptions) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Eq for FootprintOptions

impl StructuralPartialEq for FootprintOptions