List of all items
Structs
- bamranges::Ranges
- bamranges::RangesIterator
- basemods::BaseMod
- basemods::BaseMods
- bio_io::BamChunk
- center::CenterPosition
- center::CenteredFiberData
- cli::AddNucleosomeOptions
- cli::CenterOptions
- cli::Cli
- cli::DecoratorOptions
- cli::ExtractOptions
- cli::FireOptions
- cli::FootprintOptions
- cli::PredictM6AOptions
- decorator::Decorator
- extract::FiberOut
- fiber::FiberseqData
- fiber::FiberseqRecords
- fire::FireFeats
- fire::FireFeatsInRange
- fire::FireFeatsInRangeBuilder
- fire::MapPrecisionValues
- fire::PrecisionTable
- footprint::FootprintYaml
Enums
Functions
- bam_writer
- bamlift::is_sorted
- bamlift::lift_query_positions
- bamlift::lift_query_positions_exact
- bamlift::lift_query_range
- bamlift::lift_query_range_exact
- bamlift::lift_reference_positions
- bamlift::lift_reference_positions_exact
- bamlift::lift_reference_range_exact
- bamlift::merge_two_lists
- bamlift::merge_two_lists_with_qual
- bio_io::bam_reader
- bio_io::buffer_from
- bio_io::find_pb_polymerase
- bio_io::get_f32_tag
- bio_io::get_pb_u16_tag_as_u8
- bio_io::get_u32_tag
- bio_io::get_u8_tag
- bio_io::no_length_progress_bar
- bio_io::program_bam_writer
- bio_io::write_to_file
- bio_io::writer
- center::center
- center::center_fiberdata
- center::read_center_positions
- clear_kinetics
- cli::get_styles
- cli::make_cli_app
- cli::make_cli_parse
- cli::print_completions
- decorator::bed12_from_fiber
- decorator::decorator_from_bam
- decorator::fire_decorators
- decorator::get_decorators_from_bam
- decorator::get_fire_color
- decorator::pos_to_string
- extract::extract_contained
- extract::process_bam_chunk
- fire::add_fire_to_bam
- fire::add_fire_to_rec
- fire::fire_to_bed9
- fire::get_bins
- footprint::define_footprint
- footprint::start_finding_footprints
- join_by_str
- join_by_str_option
- join_by_str_option_can_skip
- nucleosomes::add_nucleosomes_to_bam
- nucleosomes::add_nucleosomes_to_record
- nucleosomes::check_nucleosomes
- nucleosomes::d_segment_nucleosomes
- nucleosomes::filter_for_end
- nucleosomes::find_msps
- nucleosomes::find_nucleosomes
- strip_basemods::strip_base_mods
- unzip_to_vectors
Statics
- cli::MIN_ML_SCORE
- fire::FIRE_CONF_JSON
- fire::FIRE_MODEL
- nucleosomes::ALLOWED_SKIPS
- nucleosomes::COMBO_NUC_LEN
- nucleosomes::DIST_FROM_END
- nucleosomes::MIN_DIST_ADDED
- nucleosomes::NUC_LEN