List of all items
Structs
- FastaBatch
- FastaConfig
- FastaIndex
- FastaIndexEntry
- FastaPartition
- FastaPartitionConfig
- FastaReader
- FastaRecord
- FastaRecordRef
- FastaReferenceChunk
- FastaReferenceChunkRef
- FastaReferenceChunks
- FastaStats
- FastaVisitRecord
- FastqBatch
- FastqChunkConfig
- FastqChunkStats
- FastqConfig
- FastqPair
- FastqPosition
- FastqReader
- FastqRecord
- FastqStats
- FastqVisitRecord
- IndexedFastaReader
- InterleavedPairs
- OwnedFastaBatch
- OwnedFastaRecord
- PairedFastqBatch
- PairedFastqPairs
- PairedFastqReader
- PairedRecords
- RecordRef
- pack::BaseSummary
- pack::PackedRecordSummary
- pack::PackedSequence
- pack::QualitySummary
- pack::TrustedPackSlab
- pack::TrustedPackedPair
- pack::TrustedPackedRecord
Enums
- DetectedInputKind
- FastaShape
- FastqError
- PairValidation
- PairingMode
- pack::PackBuffer
- pack::PackError
- pack::PackKernel
- pack::PackedBase
Traits
Functions
- build_fasta_index
- count_fasta_bytes
- count_fasta_read
- count_fastq_bytes
- count_fastq_read
- count_fastq_read_with_config
- count_two_line_fasta_bytes
- count_two_line_fasta_read
- detect_fasta_shape
- detect_file_input_kind
- open_fasta
- open_fasta_for_reference
- open_fasta_with_config
- open_fastq
- open_fastq_with_config
- open_paired_fastq
- open_paired_fastq_with_config
- open_paired_fastq_with_configs
- pack::bin_qualities_into
- pack::bin_qualities_into_slice
- pack::bit_mask_len
- pack::is_masked
- pack::pack_bases
- pack::pack_bases_and_summarize_qualities_into
- pack::pack_bases_into
- pack::pack_bases_into_slices
- pack::pack_trusted_fastq
- pack::pack_trusted_fastq_direct
- pack::pack_trusted_fastq_direct_sink
- pack::pack_trusted_fastq_read
- pack::pack_trusted_fastq_read_direct
- pack::pack_trusted_fastq_read_direct_sink
- pack::pack_trusted_fastq_read_sink
- pack::pack_trusted_fastq_sink
- pack::pack_trusted_paired_fastq_read
- pack::packed_base_at
- pack::packed_base_len
- pack::selected_pack_kernel
- pack::summarize_qualities
- paired_records
- plan_fasta_partitions
- strip_pair_suffix
- visit_fasta_bytes
- visit_fasta_bytes_auto
- visit_fastq_bytes
- visit_two_line_fasta_bytes
- visit_two_line_fasta_read