Struct FastqConfig 

pub struct FastqConfig {
    pub slab_size: usize,
    pub validate: bool,
    pub pairing: PairingMode,
    pub pair_validation: PairValidation,
}

Configuration for FASTQ batch readers.

The default is a validated, unpaired reader with a 1 MiB slab and full pair identifier validation when pairing APIs are used.

Fields

slab_size: usize

Target slab size in bytes.

Values below 1024 are raised to 1024. Larger slabs reduce carry frequency for long records but increase the reusable buffer size.

validate: bool

Validate FASTQ structure while framing records.

Validation checks the leading @, leading +, and sequence/quality length equality. Disable only for trusted inputs.

pairing: PairingMode

Whether a single stream should be interpreted as unpaired or interleaved.

pair_validation: PairValidation

Identifier validation policy for paired APIs.

Implementations

impl FastqConfig

pub fn interleaved(self) -> Self

Treat a single FASTQ stream as adjacent interleaved read pairs.

pub fn pair_validation(self, pair_validation: PairValidation) -> Self

Set the paired-read identifier validation policy.

Trait Implementations

impl Clone for FastqConfig

fn clone(&self) -> FastqConfig

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for FastqConfig

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for FastqConfig

fn default() -> Self

Returns the “default value” for a type.