Struct FastqVisitRecord 

pub struct FastqVisitRecord<'a> { /* private fields */ }

Borrowed FASTQ record passed to FastqReader::visit_records.

This view is optimized for single-pass consumers that do not need the batch side table. The slices point directly into the reader slab and are valid only for the duration of the visitor callback.

Implementations

impl<'a> FastqVisitRecord<'a>

pub fn name(self) -> &'a [u8]

Return the header line including the leading @.

Examples found in repository

examples/fastq_chunk_sink.rs (line 24)

    fn record(&mut self, record: FastqVisitRecord<'_>) -> Result<()> {
        self.bases += record.seq().len() as u64;
        self.reads.push(OwnedRead {
            name: record.name().to_vec(),
            seq: record.seq().to_vec(),
            qual: record.qual().to_vec(),
        });
        Ok(())
    }

pub fn seq(self) -> &'a [u8]

Return the sequence line.

Examples found in repository

examples/fastq_chunk_sink.rs (line 22)

    fn record(&mut self, record: FastqVisitRecord<'_>) -> Result<()> {
        self.bases += record.seq().len() as u64;
        self.reads.push(OwnedRead {
            name: record.name().to_vec(),
            seq: record.seq().to_vec(),
            qual: record.qual().to_vec(),
        });
        Ok(())
    }

pub fn plus(self) -> &'a [u8]

Return the plus line.

pub fn qual(self) -> &'a [u8]

Return the quality line.

Examples found in repository

examples/fastq_chunk_sink.rs (line 26)

    fn record(&mut self, record: FastqVisitRecord<'_>) -> Result<()> {
        self.bases += record.seq().len() as u64;
        self.reads.push(OwnedRead {
            name: record.name().to_vec(),
            seq: record.seq().to_vec(),
            qual: record.qual().to_vec(),
        });
        Ok(())
    }

Trait Implementations

impl<'a> Clone for FastqVisitRecord<'a>

fn clone(&self) -> FastqVisitRecord<'a>

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl<'a> Copy for FastqVisitRecord<'a>

impl<'a> Debug for FastqVisitRecord<'a>

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.