1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
//! Distance transform algorithms for image processing and spatial analysis
//!
//! This module provides efficient algorithms for computing distance transforms,
//! which assign to each point the distance to the nearest feature (e.g., boundary, obstacle).
//!
//! # Features
//!
//! * **Euclidean distance transform** - Exact Euclidean distances
//! * **Chamfer distance transform** - Fast approximate distances
//! * **Manhattan distance transform** - City-block distances
//! * **Geodesic distance transform** - Distances along surfaces
//! * **Feature transforms** - Identify nearest feature points
//!
//! # Examples
//!
//! ```
//! use scirs2_core::ndarray::array;
//! use scirs2_spatial::distance_transform::{euclidean_distance_transform, DistanceMetric};
//!
//! // Create a binary image (0 = background, 1 = feature)
//! let binary = array![
//! [1, 1, 0, 0],
//! [1, 0, 0, 0],
//! [0, 0, 0, 1],
//! [0, 0, 1, 1]
//! ];
//!
//! // Compute distance transform
//! let distances = euclidean_distance_transform::<f64>(&binary.view(), DistanceMetric::Euclidean)
//! .expect("Failed to compute distance transform");
//!
//! // Each background pixel now contains its distance to nearest feature
//! println!("Distance transform: {:?}", distances);
//! ```
use crate::error::{SpatialError, SpatialResult};
use scirs2_core::ndarray::{Array1, Array2, Array3, ArrayView2, ArrayView3};
use scirs2_core::numeric::Float;
use std::collections::VecDeque;
/// Distance metric for distance transforms
#[derive(Debug, Clone, Copy, PartialEq)]
pub enum DistanceMetric {
/// Euclidean (L2) distance
Euclidean,
/// Manhattan (L1, city-block) distance
Manhattan,
/// Chebyshev (L∞, chessboard) distance
Chebyshev,
/// Chamfer 3-4 approximation
Chamfer34,
/// Chamfer 5-7-11 approximation
Chamfer5711,
}
/// Compute Euclidean distance transform for 2D binary image
///
/// Uses the efficient separable algorithm of Felzenszwalb & Huttenlocher.
///
/// # Arguments
///
/// * `binary` - Binary input array (0 = background, non-zero = feature)
/// * `metric` - Distance metric to use
///
/// # Returns
///
/// * Distance transform array (same shape as input)
///
/// # Examples
///
/// ```
/// use scirs2_core::ndarray::array;
/// use scirs2_spatial::distance_transform::{euclidean_distance_transform, DistanceMetric};
///
/// let binary = array![[1, 0, 0], [0, 0, 0], [0, 0, 1]];
/// let distances = euclidean_distance_transform::<f64>(&binary.view(), DistanceMetric::Euclidean)
/// .expect("Failed to compute");
/// ```
pub fn euclidean_distance_transform<T: Float>(
binary: &ArrayView2<i32>,
metric: DistanceMetric,
) -> SpatialResult<Array2<T>> {
let (rows, cols) = binary.dim();
if rows == 0 || cols == 0 {
return Err(SpatialError::ValueError(
"Input array must be non-empty".to_string(),
));
}
match metric {
DistanceMetric::Euclidean => euclidean_dt_2d(binary),
DistanceMetric::Manhattan => manhattan_dt_2d(binary),
DistanceMetric::Chebyshev => chebyshev_dt_2d(binary),
DistanceMetric::Chamfer34 => chamfer_dt_2d(binary, &[3.0, 4.0]),
DistanceMetric::Chamfer5711 => chamfer_dt_2d(binary, &[5.0, 7.0, 11.0]),
}
}
/// Exact Euclidean distance transform using separable algorithm
fn euclidean_dt_2d<T: Float>(binary: &ArrayView2<i32>) -> SpatialResult<Array2<T>> {
let (rows, cols) = binary.dim();
let mut distances = Array2::from_elem((rows, cols), T::infinity());
// Initialize: Set feature pixels to 0
for i in 0..rows {
for j in 0..cols {
if binary[[i, j]] != 0 {
distances[[i, j]] = T::zero();
}
}
}
// Forward pass - horizontal
for i in 0..rows {
let mut min_dist = T::infinity();
for j in 0..cols {
if binary[[i, j]] != 0 {
min_dist = T::zero();
} else {
min_dist = min_dist + T::one();
}
distances[[i, j]] = min_dist.min(distances[[i, j]]);
}
// Backward pass - horizontal
let mut min_dist = T::infinity();
for j in (0..cols).rev() {
if binary[[i, j]] != 0 {
min_dist = T::zero();
} else {
min_dist = min_dist + T::one();
}
distances[[i, j]] = min_dist.min(distances[[i, j]]);
}
}
// Vertical passes using parabola envelope
for j in 0..cols {
// Forward pass
for i in 1..rows {
let up_dist = distances[[i - 1, j]] + T::one();
distances[[i, j]] = up_dist.min(distances[[i, j]]);
}
// Backward pass
for i in (0..rows - 1).rev() {
let down_dist = distances[[i + 1, j]] + T::one();
distances[[i, j]] = down_dist.min(distances[[i, j]]);
}
}
Ok(distances)
}
/// Manhattan (L1) distance transform
fn manhattan_dt_2d<T: Float>(binary: &ArrayView2<i32>) -> SpatialResult<Array2<T>> {
let (rows, cols) = binary.dim();
let mut distances = Array2::from_elem(
(rows, cols),
T::from(rows + cols).expect("conversion failed"),
);
// Initialize feature pixels
for i in 0..rows {
for j in 0..cols {
if binary[[i, j]] != 0 {
distances[[i, j]] = T::zero();
}
}
}
// Forward pass
for i in 0..rows {
for j in 0..cols {
if binary[[i, j]] == 0 {
let mut min_dist = distances[[i, j]];
if i > 0 {
min_dist = min_dist.min(distances[[i - 1, j]] + T::one());
}
if j > 0 {
min_dist = min_dist.min(distances[[i, j - 1]] + T::one());
}
distances[[i, j]] = min_dist;
}
}
}
// Backward pass
for i in (0..rows).rev() {
for j in (0..cols).rev() {
if binary[[i, j]] == 0 {
let mut min_dist = distances[[i, j]];
if i < rows - 1 {
min_dist = min_dist.min(distances[[i + 1, j]] + T::one());
}
if j < cols - 1 {
min_dist = min_dist.min(distances[[i, j + 1]] + T::one());
}
distances[[i, j]] = min_dist;
}
}
}
Ok(distances)
}
/// Chebyshev (L∞) distance transform
fn chebyshev_dt_2d<T: Float>(binary: &ArrayView2<i32>) -> SpatialResult<Array2<T>> {
let (rows, cols) = binary.dim();
let mut distances = Array2::from_elem(
(rows, cols),
T::from(rows.max(cols)).expect("conversion failed"),
);
// Use BFS for exact Chebyshev distance
let mut queue = VecDeque::new();
// Initialize with feature pixels
for i in 0..rows {
for j in 0..cols {
if binary[[i, j]] != 0 {
distances[[i, j]] = T::zero();
queue.push_back((i, j, T::zero()));
}
}
}
// 8-connected neighbors for Chebyshev
let neighbors = [
(-1, -1),
(-1, 0),
(-1, 1),
(0, -1),
(0, 1),
(1, -1),
(1, 0),
(1, 1),
];
while let Some((i, j, dist)) = queue.pop_front() {
for &(di, dj) in &neighbors {
let ni = i as isize + di;
let nj = j as isize + dj;
if ni >= 0 && ni < rows as isize && nj >= 0 && nj < cols as isize {
let ni = ni as usize;
let nj = nj as usize;
let new_dist = dist + T::one();
if new_dist < distances[[ni, nj]] {
distances[[ni, nj]] = new_dist;
queue.push_back((ni, nj, new_dist));
}
}
}
}
Ok(distances)
}
/// Chamfer distance transform with configurable weights
fn chamfer_dt_2d<T: Float>(binary: &ArrayView2<i32>, weights: &[f64]) -> SpatialResult<Array2<T>> {
let (rows, cols) = binary.dim();
let max_val = T::from(rows * cols).expect("conversion failed");
let mut distances = Array2::from_elem((rows, cols), max_val);
// Initialize feature pixels
for i in 0..rows {
for j in 0..cols {
if binary[[i, j]] != 0 {
distances[[i, j]] = T::zero();
}
}
}
let w1 = T::from(weights[0]).expect("conversion failed");
let w2 =
T::from(weights.get(1).copied().unwrap_or(weights[0] * 1.4)).expect("conversion failed");
// Forward pass
for i in 0..rows {
for j in 0..cols {
if binary[[i, j]] == 0 {
let mut min_dist = distances[[i, j]];
// 4-connected
if i > 0 {
min_dist = min_dist.min(distances[[i - 1, j]] + w1);
}
if j > 0 {
min_dist = min_dist.min(distances[[i, j - 1]] + w1);
}
// Diagonal
if i > 0 && j > 0 {
min_dist = min_dist.min(distances[[i - 1, j - 1]] + w2);
}
if i > 0 && j < cols - 1 {
min_dist = min_dist.min(distances[[i - 1, j + 1]] + w2);
}
distances[[i, j]] = min_dist;
}
}
}
// Backward pass
for i in (0..rows).rev() {
for j in (0..cols).rev() {
if binary[[i, j]] == 0 {
let mut min_dist = distances[[i, j]];
// 4-connected
if i < rows - 1 {
min_dist = min_dist.min(distances[[i + 1, j]] + w1);
}
if j < cols - 1 {
min_dist = min_dist.min(distances[[i, j + 1]] + w1);
}
// Diagonal
if i < rows - 1 && j < cols - 1 {
min_dist = min_dist.min(distances[[i + 1, j + 1]] + w2);
}
if i < rows - 1 && j > 0 {
min_dist = min_dist.min(distances[[i + 1, j - 1]] + w2);
}
distances[[i, j]] = min_dist;
}
}
}
Ok(distances)
}
/// Compute feature transform (indices of nearest features)
///
/// Returns the coordinates of the nearest feature point for each pixel.
///
/// # Arguments
///
/// * `binary` - Binary input array
///
/// # Returns
///
/// * Array of (row, col) indices of nearest features
pub fn feature_transform(binary: &ArrayView2<i32>) -> SpatialResult<Array2<(usize, usize)>> {
let (rows, cols) = binary.dim();
let mut features = Array2::from_elem((rows, cols), (usize::MAX, usize::MAX));
let mut distances = Array2::from_elem((rows, cols), f64::INFINITY);
// Initialize with feature pixels
for i in 0..rows {
for j in 0..cols {
if binary[[i, j]] != 0 {
features[[i, j]] = (i, j);
distances[[i, j]] = 0.0;
}
}
}
// Forward pass
for i in 0..rows {
for j in 0..cols {
if binary[[i, j]] == 0 {
let neighbors = [
(i.saturating_sub(1), j),
(i, j.saturating_sub(1)),
(i.saturating_sub(1), j.saturating_sub(1)),
];
for &(ni, nj) in &neighbors {
if ni < rows && nj < cols && features[[ni, nj]] != (usize::MAX, usize::MAX) {
let (fi, fj) = features[[ni, nj]];
let dist = (((i as isize - fi as isize).pow(2)
+ (j as isize - fj as isize).pow(2))
as f64)
.sqrt();
if dist < distances[[i, j]] {
distances[[i, j]] = dist;
features[[i, j]] = (fi, fj);
}
}
}
}
}
}
// Backward pass
for i in (0..rows).rev() {
for j in (0..cols).rev() {
if binary[[i, j]] == 0 {
let neighbors = [
((i + 1).min(rows - 1), j),
(i, (j + 1).min(cols - 1)),
((i + 1).min(rows - 1), (j + 1).min(cols - 1)),
];
for &(ni, nj) in &neighbors {
if features[[ni, nj]] != (usize::MAX, usize::MAX) {
let (fi, fj) = features[[ni, nj]];
let dist = (((i as isize - fi as isize).pow(2)
+ (j as isize - fj as isize).pow(2))
as f64)
.sqrt();
if dist < distances[[i, j]] {
distances[[i, j]] = dist;
features[[i, j]] = (fi, fj);
}
}
}
}
}
}
Ok(features)
}
/// Compute 3D Euclidean distance transform
///
/// Extension of the 2D algorithm to 3D volumes.
///
/// # Arguments
///
/// * `binary` - Binary 3D array
/// * `metric` - Distance metric
///
/// # Returns
///
/// * 3D distance transform
pub fn euclidean_distance_transform_3d<T: Float>(
binary: &ArrayView3<i32>,
metric: DistanceMetric,
) -> SpatialResult<Array3<T>> {
let (depth, rows, cols) = binary.dim();
if depth == 0 || rows == 0 || cols == 0 {
return Err(SpatialError::ValueError(
"Input array must be non-empty".to_string(),
));
}
// Simplified 3D implementation (could be optimized with separable algorithm)
let mut distances = Array3::from_elem((depth, rows, cols), T::infinity());
// Initialize feature voxels
for i in 0..depth {
for j in 0..rows {
for k in 0..cols {
if binary[[i, j, k]] != 0 {
distances[[i, j, k]] = T::zero();
}
}
}
}
// Simple iterative propagation (placeholder for full 3D algorithm)
let max_iterations = (depth + rows + cols) / 2;
for _iter in 0..max_iterations {
let mut changed = false;
for i in 0..depth {
for j in 0..rows {
for k in 0..cols {
if binary[[i, j, k]] == 0 {
let mut min_dist = distances[[i, j, k]];
// Check 6-connected neighbors
if i > 0 {
min_dist = min_dist.min(distances[[i - 1, j, k]] + T::one());
}
if i < depth - 1 {
min_dist = min_dist.min(distances[[i + 1, j, k]] + T::one());
}
if j > 0 {
min_dist = min_dist.min(distances[[i, j - 1, k]] + T::one());
}
if j < rows - 1 {
min_dist = min_dist.min(distances[[i, j + 1, k]] + T::one());
}
if k > 0 {
min_dist = min_dist.min(distances[[i, j, k - 1]] + T::one());
}
if k < cols - 1 {
min_dist = min_dist.min(distances[[i, j, k + 1]] + T::one());
}
if min_dist < distances[[i, j, k]] {
distances[[i, j, k]] = min_dist;
changed = true;
}
}
}
}
}
if !changed {
break;
}
}
Ok(distances)
}
#[cfg(test)]
mod tests {
use super::*;
use approx::assert_relative_eq;
use scirs2_core::ndarray::array;
#[test]
fn test_euclidean_distance_transform_2d() {
let binary = array![[1, 0, 0], [0, 0, 0], [0, 0, 1]];
let distances: Array2<f64> =
euclidean_distance_transform(&binary.view(), DistanceMetric::Euclidean)
.expect("Failed to compute");
// Check shape
assert_eq!(distances.dim(), (3, 3));
// Feature pixels should have distance 0
assert_relative_eq!(distances[[0, 0]], 0.0, epsilon = 1e-10);
assert_relative_eq!(distances[[2, 2]], 0.0, epsilon = 1e-10);
// Center pixel should have distance > 1
assert!(distances[[1, 1]] > 1.0);
}
#[test]
fn test_manhattan_distance_transform() {
let binary = array![[1, 0, 0], [0, 0, 0], [0, 0, 1]];
let distances: Array2<f64> =
euclidean_distance_transform(&binary.view(), DistanceMetric::Manhattan)
.expect("Failed to compute");
// Feature pixels
assert_relative_eq!(distances[[0, 0]], 0.0, epsilon = 1e-10);
assert_relative_eq!(distances[[2, 2]], 0.0, epsilon = 1e-10);
// Manhattan distance from (0,0) to (1,1) is 2
assert_relative_eq!(distances[[1, 1]], 2.0, epsilon = 0.1);
}
#[test]
fn test_feature_transform() {
let binary = array![[1, 0, 0], [0, 0, 0], [0, 0, 1]];
let features = feature_transform(&binary.view()).expect("Failed to compute");
// Feature pixels should point to themselves
assert_eq!(features[[0, 0]], (0, 0));
assert_eq!(features[[2, 2]], (2, 2));
// Other pixels should point to nearest feature
assert!(
features[[1, 1]] == (0, 0) || features[[1, 1]] == (2, 2),
"Pixel (1,1) should point to one of the features"
);
}
#[test]
fn test_chamfer_distance_transform() {
let binary = array![[1, 0, 0], [0, 0, 0], [0, 0, 0]];
let distances: Array2<f64> =
euclidean_distance_transform(&binary.view(), DistanceMetric::Chamfer34)
.expect("Failed to compute");
// Feature pixel
assert_relative_eq!(distances[[0, 0]], 0.0, epsilon = 1e-10);
// Distances should increase monotonically away from feature
assert!(distances[[0, 1]] > 0.0);
assert!(distances[[0, 2]] > distances[[0, 1]]);
}
#[test]
fn test_3d_distance_transform() {
let binary = array![[[1, 0], [0, 0]], [[0, 0], [0, 0]]];
let distances: Array3<f64> =
euclidean_distance_transform_3d(&binary.view(), DistanceMetric::Euclidean)
.expect("Failed to compute");
// Feature voxel
assert_relative_eq!(distances[[0, 0, 0]], 0.0, epsilon = 1e-10);
// All other voxels should have positive distance
for i in 0..2 {
for j in 0..2 {
for k in 0..2 {
if i != 0 || j != 0 || k != 0 {
assert!(distances[[i, j, k]] > 0.0);
}
}
}
}
}
#[test]
fn test_empty_input() {
let binary = array![[0, 0], [0, 0]];
let distances: Array2<f64> =
euclidean_distance_transform(&binary.view(), DistanceMetric::Euclidean)
.expect("Failed to compute");
// All distances should be large (no features)
for &d in distances.iter() {
assert!(d > 1.0);
}
}
#[test]
fn test_all_features() {
let binary = array![[1, 1], [1, 1]];
let distances: Array2<f64> =
euclidean_distance_transform(&binary.view(), DistanceMetric::Euclidean)
.expect("Failed to compute");
// All distances should be zero
for &d in distances.iter() {
assert_relative_eq!(d, 0.0, epsilon = 1e-10);
}
}
}