- [Usage](#usage)
- [Available options and subcommands](#available-options-and-subcommands)
- [Install](#install)
- [conda](#conda)
- [cargo](#cargo)
- [Pre-complied binaries](#pre-complied-binaries)
- [From source](#from-source)
- [Examples](#examples)
- [Manipulating PAFs and creating liftovers](#manipulating-pafs-and-creating-liftovers)
- [Splitting up a fastx file](#splitting-up-a-fastx-file)
- [Extract fasta from a genome with a bed file](#extract-fasta-from-a-genome-with-a-bed-file)
- [TODO](#todo)