rustybam 0.2.0

bioinformatics toolkit in rust
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "rustybam"
version = "0.2.0"
authors = ["Mitchell R. Vollger <mrvollger@gmail.com>"]
build = "build.rs"
exclude = ["benchmarks/"]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "bioinformatics toolkit in rust"
homepage = "https://vollgerlab.com/rustybam/"
readme = "README.md"
keywords = [
    "cli",
    "bam",
    "paf",
    "liftover",
]
categories = ["command-line-utilities"]
license = "MIT"
repository = "https://github.com/vollgerlab/rustybam"

[features]
any_zlib = []
default = [
    "deflate_zlib_ng",
    "snap_default",
    "libdeflate",
]
deflate_rust = [
    "gzp/deflate_rust",
    "flate2/rust_backend",
]
deflate_zlib = [
    "gzp/deflate_zlib",
    "flate2/zlib",
    "any_zlib",
]
deflate_zlib_ng = [
    "gzp/deflate_zlib_ng",
    "flate2/zlib-ng-compat",
    "any_zlib",
]
libdeflate = ["gzp/libdeflate"]
snap_default = [
    "gzp/snappy_default",
    "snap",
    "snappy",
]
snappy = []

[lib]
name = "rustybam"
path = "src/lib.rs"

[[bin]]
name = "rb"
path = "src/main.rs"

[[bin]]
name = "rustybam"
path = "src/main.rs"

[[test]]
name = "visual_tests"
path = "tests/visual_tests.rs"

[dependencies.anyhow]
version = "1.0.71"

[dependencies.bimap]
version = "0.6.3"

[dependencies.bio]
version = "1.3"

[dependencies.bio-io]
version = "0.3"

[dependencies.bio-types]
version = "1.0"

[dependencies.calm_io]
version = "0.1.1"

[dependencies.chrono]
version = "0.4.26"

[dependencies.clap]
version = "3.2.22"
features = ["derive"]

[dependencies.colored]
version = "2.0.0"

[dependencies.env_logger]
version = "0.9.0"

[dependencies.flate2]
version = "~1"
default-features = false

[dependencies.gzp]
version = "0.11"
default-features = false

[dependencies.itertools]
version = "0.10.0"

[dependencies.itoa]
version = "1"

[dependencies.lazy_static]
version = "1.4.0"

[dependencies.linear-map]
version = "1.2.0"

[dependencies.log]
version = "0.4.19"

[dependencies.natord]
version = "1.0.9"

[dependencies.needletail]
version = "0.5.1"

[dependencies.niffler]
version = "2.5.0"
features = ["gz"]
default-features = false

[dependencies.num-format]
version = "0.4.4"

[dependencies.rayon]
version = "1.7"

[dependencies.regex]
version = "1.8"

[dependencies.rust-htslib]
version = "0.44"

[dependencies.snap]
version = "1.1"
optional = true

[build-dependencies.clap]
version = "3.2.22"
features = ["derive"]

[build-dependencies.clap_complete]
version = "3.2.5"

[build-dependencies.env_logger]
version = "0.9.0"

[build-dependencies.log]
version = "0.4.19"

[profile.dist]
split-debuginfo = "packed"
inherits = "release"

[profile.profiling]
debug = 2
inherits = "release"