rustalign-cli 0.2.0

Ultrafast DNA sequence aligner using FM-index and Smith-Waterman
Documentation 
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[package]
name = "rustalign-cli"
version.workspace = true
edition.workspace = true
license.workspace = true
authors.workspace = true
repository.workspace = true
description.workspace = true
keywords.workspace = true
categories.workspace = true

# Main unified binary with subcommands
[[bin]]
name = "rustalign"
path = "bin/rustalign.rs"

# Legacy binaries for backward compatibility
[[bin]]
name = "rustalign-align"
path = "bin/align.rs"

[[bin]]
name = "rustalign-build"
path = "bin/build.rs"

[[bin]]
name = "rustalign-inspect"
path = "bin/inspect.rs"

[dependencies]
rustalign-common = { path = "../rustalign-common", version = "0.2.0" }
rustalign-fmindex = { path = "../rustalign-fmindex", version = "0.2.0" }
rustalign-aligner = { path = "../rustalign-aligner", version = "0.2.0" }
rustalign-io = { path = "../rustalign-io", version = "0.2.0" }
clap.workspace = true
thiserror.workspace = true
anyhow.workspace = true
rayon.workspace = true