rectree2svg

Build a svg phylogenetic reconciled tree with Rust

Keywords: phylogeny, reconciled trees, phylogenetic trees

Read a recphyloxml file: create a svg representation of the gene trees and species tree with events (loss, duplication, speciation, transfer).

Read a newick or phyloxml file: create a svg representation of the tree.

Currently under development.

Under development:

• Accepting old recPhyloXML format
• Allow 2/3 reconciliation levels (host/species/gene)

Instructions:

• cargo build --release
• target/release/rectree2svg -h

Help:

Read a newick, phyloxml or recPhyloXML file and create a svg.

Format is guessed according to filename (default is newick)

Usage:

target/debug/rectree2svg -f input file [-b][-h][-i][-I][-l factor][-o output file][-p][-s][-v]

-b : open svg in browser
-h : help
-i : display internal gene nodes
-I : display internal species nodes
-l factor: use branch length, using the given factor
-o outputfile : set name of output file
-p : build a phylogram
-s : drawing species tree only
-v : verbose