ngs 0.4.0

Command line tool for processing next-generation sequencing data.
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85

[dependencies.anyhow]
version = "1.0.65"

[dependencies.clap]
features = ["cargo", "derive", "string"]
version = "4.0.10"

[dependencies.flate2]
version = "1.0.23"

[dependencies.futures]
version = "0.3.21"

[dependencies.git-testament]
version = "0.2.1"

[dependencies.indexmap]
version = "1.9.1"

[dependencies.indicatif]
version = "0.16.2"

[dependencies.itertools]
version = "0.10.5"

[dependencies.noodles]
features = ["async", "bam", "bgzf", "csi", "core", "fasta", "fastq", "gff", "sam", "cram"]
version = "0.34.0"

[dependencies.num-format]
version = "0.4.0"

[dependencies.plotly]
version = "0.8.1"

[dependencies.prettytable-rs]
version = "0.9.0"

[dependencies.rand]
version = "0.8.5"

[dependencies.rand_distr]
version = "0.4.3"

[dependencies.regex]
version = "1.5.5"

[dependencies.rust-lapper]
version = "1.0.1"

[dependencies.serde]
features = ["derive"]
version = "1.0.137"

[dependencies.serde_json]
features = ["preserve_order"]
version = "1.0.81"

[dependencies.tokio]
features = ["fs", "io-std", "rt-multi-thread"]
version = "1.18.0"

[dependencies.tracing]
version = "0.1.34"

[dependencies.tracing-subscriber]
version = "0.3.11"

[features]
default = []
extended-reference-genomes = []

[package]
authors = ["Clay McLeod <clay.l.mcleod@gmail.com>"]
description = "Command line tool for processing next-generation sequencing data."
edition = "2021"
license = "Apache-2.0/MIT"
name = "ngs"
publish = true
readme = "README.md"
rust-version = "1.64.0"
version = "0.4.0"

[profile.release]
debug = true