Crate ngs

ngs is a command line tool written to facilitate the analysis of next-generation sequencing analysis. This package is composed of both a library crate, as well as a binary crate.

This documentation generally refers to the library crate documentation for use by developers of ngs. If you’re interested in details about using the ngs command line tool (much more common), please visit the wiki page.

Modules

convert

Functionality related to the ngs convert subcommand.

derive

Functionality related to the ngs derive subcommand.

generate

Functionality related to the ngs generate subcommand.

index

Functionality related to the ngs index subcommand.

list

Functionality related to the ngs list subcommand.

plot

Functionality related to the ngs plot subcommand.

qc

Functionality related to the ngs qc subcommand.

utils

Utilities that are used across the ngs subcommands.

view

Functionality related to the ngs view subcommand.

Macros

sequence

Expands the provided arguments into a new Sequence. This is provided for convenience when specifying large reference genomes.