Crate ngs

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ngs is a command line tool written to facilitate the analysis of next-generation sequencing analysis. This package is composed of both a library crate, as well as a binary crate.

This documentation generally refers to the library crate documentation for use by developers of ngs. If you’re interested in details about using the ngs command line tool (much more common), please visit the wiki page.

Modules

  • convert
    Functionality related to the ngs convert subcommand.
  • derive
    Functionality related to the ngs derive subcommand.
  • generate
    Functionality related to the ngs generate subcommand.
  • index
    Functionality related to the ngs index subcommand.
  • list
    Functionality related to the ngs list subcommand.
  • plot
    Functionality related to the ngs plot subcommand.
  • qc
    Functionality related to the ngs qc subcommand.
  • utils
    Utilities that are used across the ngs subcommands.
  • view
    Functionality related to the ngs view subcommand.

Macros

  • sequence
    Expands the provided arguments into a new Sequence. This is provided for convenience when specifying large reference genomes.