neuroformats 0.5.0

Handling of structural neuroimaging file formats. The focus is on surface-based brain morphometry data and FreeSurfer file formats.
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//! Rust implementation of several structural neuroimaging file formats.
//!
//! The focus of this package is on reading surface-based brain morphometry data as produced from MRI images by FreeSurfer, CAT12 and similar software packages.

#[cfg(test)]
extern crate approx;

pub mod config;
pub mod error;
pub mod fs_annot;
pub mod fs_asc;
pub mod fs_curv;
pub mod fs_label;
pub mod fs_lta;
pub mod fs_mgh;
pub mod fs_paint;
pub mod fs_surface;
pub mod fs_weight;
pub mod nifti1;
pub mod util;

/// Re-export of the `ndarray` crate version used by this crate.
///
/// Some public items (e.g., the `Array4` voxel data in [`FsMghData`] and the
/// `Array2` returned by [`FsMghHeader::vox2ras`]) expose `ndarray` types. Use
/// `neuroformats::ndarray::...` to name these types and always get the exact
/// version this crate was built against, without adding your own `ndarray`
/// dependency.
pub use ndarray;

pub use config::{
    max_bytes_per_file, max_label_entries, max_string_length, max_vertices, reset_limits_to_defaults,
    set_max_bytes_per_file, set_max_label_entries, set_max_string_length, set_max_vertices,
};

pub use fs_annot::{read_annot, write_annot, FsAnnot, FsAnnotColortable};
pub use fs_asc::{read_asc, write_asc, FsAsc};
pub use fs_curv::{read_curv, write_curv, FsCurv, FsCurvHeader};
pub use fs_label::{read_label, write_label, FsLabel};
pub use fs_lta::{read_lta, FsLta, LtaVolumeInfo};
pub use fs_mgh::{
    read_mgh, write_mgh, FsMgh, FsMghData, FsMghHeader, MRI_FLOAT, MRI_INT, MRI_SHORT, MRI_UCHAR,
};
pub use fs_paint::{read_paint, write_paint, FsPaint};
pub use fs_surface::{
    coord_center, coord_extrema, read_surf, write_surf, BrainMesh, FsSurface, FsSurfaceHeader,
};
pub use fs_weight::{read_weight, write_weight, FsWeight};
pub use nifti1::{read_nifti, write_nifti, Nifti1, Nifti1Header};
pub use util::{values_to_colors, vec32minmax};