nanalogue 0.1.11

BAM/Mod BAM parsing and analysis tool with a single-molecule focus
Documentation 
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[
{
  "alignment_type": "primary_forward",
  "alignment": {
    "start": 9,
    "end": 17,
    "contig": "dummyI",
    "contig_id": 0
  },
  "mod_table": [
    {
      "base": "T",
      "is_strand_plus": true,
      "mod_code": "T",
      "data": [
        [0, 4, 0.0, 255, 9, 13],
        [3, 5, 0.0, 255, 12, 14],
        [4, 8, 0.0, 255, 13, 17]
      ]
    }
  ],
  "read_id": "5d10eb9a-aae1-4db8-8ec6-7ebb34d32575",
  "seq_len": 8
},
{
  "alignment_type": "primary_forward",
  "alignment": {
    "start": 23,
    "end": 71,
    "contig": "dummyIII",
    "contig_id": 2
  },
  "mod_table": [
    {
      "base": "T",
      "is_strand_plus": true,
      "mod_code": "T",
      "data": [
        [3, 9, 1.0, 255, 26, 32],
        [8, 28, 0.5, 255, 31, 51],
        [27, 40, 0.0, 255, 50, 63],
        [39, 48, 0.5, 255, 62, 71]
      ]
    }
  ],
  "read_id": "a4f36092-b4d5-47a9-813e-c22c3b477a0c",
  "seq_len": 48
},
{
  "alignment_type": "primary_reverse",
  "alignment": {
    "start": 3,
    "end": 36,
    "contig": "dummyII",
    "contig_id": 1
  },
  "mod_table": [
    {
      "base": "T",
      "is_strand_plus": true,
      "mod_code": "T",
      "data": [
        [12, 14, 0.0, 255, 15, 17],
        [13, 17, 0.0, 255, 16, 20],
        [16, 20, 0.0, 255, 19, 23],
        [19, 21, 0.5, 255, 22, 24]
      ]
    }
  ],
  "read_id": "fffffff1-10d2-49cb-8ca3-e8d48979001b",
  "seq_len": 33
},
{
  "alignment_type": "unmapped",
  "mod_table": [
    {
      "base": "G",
      "is_strand_plus": false,
      "mod_code": "7200",
      "data": [
        [28, 30, 0.0, 255, -1, -1],
        [29, 31, 0.0, 255, -1, -1],
        [30, 33, 0.0, 255, -1, -1],
        [32, 44, 0.0, 255, -1, -1],
        [43, 45, 0.0, 255, -1, -1]
      ]
    },
    {
      "base": "T",
      "is_strand_plus": true,
      "mod_code": "T",
      "data": [
        [3, 9, 1.0, 255, -1, -1],
        [8, 28, 0.5, 255, -1, -1],
        [27, 40, 0.0, 255, -1, -1],
        [39, 48, 0.5, 255, -1, -1]
      ]
    }
  ],
  "read_id": "a4f36092-b4d5-47a9-813e-c22c3b477a0c",
  "seq_len": 48
}
]