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nanalogue-0.1.11
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nanalogue 0.1.11
BAM/Mod BAM parsing and analysis tool with a single-molecule focus
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contigs.fa
example_1.bam
example_1.bam.bai
example_1.Mm_Ml.bam
example_1.mM_mL.bam
example_1.mm_ml.bam
example_1.Mm_Ml.bam.bai
example_1.mM_mL.bam.bai
example_1.mm_ml.bam.bai
example_10.sam
example_10_win_grad_json_win_10_step_1
example_10_win_grad_json_win_20_step_2
example_10_win_grad_win_10_step_1
example_10_win_grad_win_20_step_2
example_11.sam
example_11_win_grad_json_win_10_step_1
example_11_win_grad_json_win_20_step_2
example_11_win_grad_win_10_step_1
example_11_win_grad_win_20_step_2
example_1_copy_invalid_index.bam
example_1_copy_invalid_index.bam.bai
example_1_copy_no_index.bam
example_1_detailed_pretty_print
example_1_detailed_print
example_1_invalid_sequencing_summary
example_1_peek
example_1_read_info
example_1_read_table_hide_mods
example_1_read_table_show_mods
example_1_read_table_show_mods_seq_summ
example_1_sequencing_summary
example_1_window_reads
example_1_window_reads_gt_0pt4
example_1_window_reads_gt_0pt8
example_1_window_reads_json
example_2_sequencing_summary
example_2_table_w_zero_hide_mods
example_2_table_w_zero_hide_mods_seq_summ
example_2_table_w_zero_show_mods
example_2_table_w_zero_show_mods_seq_summ
example_2_zero_len.sam
example_3.bam
example_3.bam.bai
example_3_peek
example_3_read_stats
example_3_subset_1
example_3_subset_w_invalid
example_4_invalid_basequal_len.sam
example_5_valid_basequal.sam
example_5_valid_basequal_read_table_show_mods
example_5_valid_basequal_read_table_show_mods_subset
example_5_valid_basequal_read_table_show_mods_subset_no_overlap
example_6.sam
example_6_read_table_show_mods
example_7.sam
example_7_table_hide_mods
example_7_table_hide_mods_ins_lowercase
example_7_window_reads
example_7_window_reads_json
example_8.sam
example_9.sam
pacbio_HG002_GRCh38_haplotagged_CpG_meth_202202_remote_peek
README.md
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contigs_and_lengths: dummyI 22 dummyII 48 dummyIII 76 modifications: G-7200 T+T