# nale
Nale ALigns Efficiently
## About
Nale is a library that performs profile Hidden Markov Model (PHMM) biological sequence alignment.
This libary is in early stages of development. The API should be considered highly unstable, and documentation is lacking.
## Installation
To build nale from source, you'll first need to install Rust and Cargo.
The easiest way to do that is to use [rustup](https://rustup.rs/).
Once that's done, you can then build nale:
git clone https://github.com/TravisWheelerLab/nale
cd nale/
cargo build
## License
Nale is licensed under the BSD-3-Clause license.
See `LICENSE` for details.
## Authors
Jack Roddy - jroddy@arizona.edu