nale

Nale ALigns Efficiently

About

Nale is a library that performs profile Hidden Markov Model (PHMM) biological sequence alignment.

This libary is in early stages of development. The API should be considered highly unstable, and documentation is lacking.

To build nale from source, you'll first need to install Rust and Cargo. The easiest way to do that is to use rustup.

Once that's done, you can then build nale:

git clone https://github.com/TravisWheelerLab/nale
cd nale/
cargo build

Nale is licensed under the BSD-3-Clause license.

See LICENSE for details.