minimap2-sys 0.1.24+minimap2.2.30

Bindings to libminimap2
Documentation

System Bindings for libminimap2

Use this if you need lower-level bindings for minimap2.

Minimap2 Version

Minimap2 2.28

Breaking Changes

0.1.29

Potentially an issue, derive(copy) is no longer valid for structs where we have implemented a Drop trait. So I've added some newtypes where appropriate. Hopefully it's an invisible change. This is primarily for mm_idx_t. If you use it directly (instead of MmIdx newtype), you need to call mm_idx_destroy() manually.

0.1.18

mm2-fast and minimap2 have diverged. At this point mm2-fast is no longer supported. Please use a previous crate version.

Features

  • vendored - Regenerate the bindings from the vendored minimap2 source. Requires llvm installed. Useful to update the bindings to a different version of minimap2.
  • simde - Enable simde support (SIMD-everywhere)
  • sse - Enable some sse bindings
  • zlib-ng - Use zlib-ng
  • static - Static compilation

TODO

  • Can we decouple from pthread? This would allow Windows and (possibly) WASM compilation.

Changelog

0.1.29 minimap2.2.29

  • Update to minimap2 2.29
  • Update to 2024 edition
  • Remove some noise from the build system
  • Remove Drop impl for mm_idx_t. If you use it directly (instead of MmIdx newtype), you need to call mm_idx_destroy() manually.

0.1.21 minimap2.2.28

  • Flag functions for IdxOpt and MapOpt @dwpeng
  • Syntactic sugar for mm_idx_t to support Drop, Deref, and DerefMut

0.1.20 minimap2.2.28

  • Move Drop impl to -sys crate

0.1.19 minimap2.2.28

  • Update to minimap2 2.28

0.1.18 minimap2.2.27

  • Regenerated bindings
  • mm2-fast and minimap2 have diverged

0.1.17 minimap2.2.27

  • Updated to newest version of minimap2 @jguhlin
  • mm2-fast also received some updates
  • Updated deps, rebuilt bindings @jguhlin

0.1.16 minimap2.2.26

  • Much better cross-compilation support thanks for @Adoni5

0.1.15 minimap2.2.26

  • Huge thanks to @leiste375 for aarch64 compilation!
  • Better static linking support

0.1.14 minimap2.2.26

  • Fix regression by reverting to minimap2 release version

0.1.13 minimap2.2.26

  • Possible fixes for aarch64 compilation
  • Cleaner build system
  • Early support for cross crate for cross compilation

0.1.12 minimap2.2.26

  • Fix bug with SSE2/SSE4...

0.1.11 minimap2.2.26

  • More transparent versioning of upstream minimap2
  • Update minimap2-sys minimap2 to release 2.26
  • minimap2-sys: update libc, bindgen deps
  • Better sse support. Renamed sse flag to sse2only, sse4.1 is otherwise enabled by default (if detected)
  • Hopefully better macos, aarch64, and NEON support

0.1.10

  • Fix bug relating to compiling mm2-fast

0.1.9

  • Enable SIMD-everywhere compilation support

0.1.8

  • Changed how zlib is compiled
  • Dep versions update
  • Added SSE compilation feature (Mostly autodetects)

0.1.7

  • Make bindgen an optional feature
  • zlib support for musl builds