##maf version=1 scoring=multiz
# multiz.v11.2 M=10 /home/wangq/data/alignment/example/scer/Scer_n3_Spar_mz/VIII.step1.maf /home/wangq/data/alignment/example/scer/Pairwise/S288cvsSpar/mafSynNet/VIII.synNet.maf 1 /home/wangq/data/alignment/example/scer/Scer_n3_Spar_mz/VIII.out1 /home/wangq/data/alignment/example/scer/Scer_n3_Spar_mz/VIII.out2
# multiz.v11.2 M=10 /home/wangq/data/alignment/example/scer/Pairwise/S288cvsRM11_1a/mafSynNet/VIII.synNet.maf /home/wangq/data/alignment/example/scer/Pairwise/S288cvsEC1118/mafSynNet/VIII.synNet.maf 1 /home/wangq/data/alignment/example/scer/Scer_n3_Spar_mz/VIII.out1 /home/wangq/data/alignment/example/scer/Scer_n3_Spar_mz/VIII.out2
a score=514600.0
s S288c.VIII 13376 34 + 562643 TTACTCGTCTTGCGGCCAAAACTCGAAGAAAAAC
s RM11_1a.scaffold_12 3529 34 + 536628 TTACTCGTCTTGCGGCCAAAACTCGAAGAAAAAC
s EC1118.FN393072_1 8746 34 + 161280 TTACTCGTCTTGCGGCCAAAACTCGAAGAAAAAC
s Spar.gi_29362578 637 33 - 73522 TTACCCGTCTTGCGTCCAAAACTCGAA-AAAAAC
a score=36468.0
s S288c.VIII 193447 99 + 562643 CG--GCATAATTTTTTCCAGGCACTTTCCGCTGCAG---TTGTTGTGCTGACAATAGTCCCATCTAGGTCAAAAAGACAAAGATCTACTGAAAATTGTGGCAtt
s RM11_1a.scaffold_12 189216 101 + 536628 CGTAACACAACTTGGTCCATGC---TTTCTCTGCGGCCACTGTTGTACTCACTATGGTACCATCTAGGTCAAAAAGACATAGATCAGCTGAAAATTCTGCCATT
s EC1118.FN393073_1 25682 99 + 44323 CG--GCATAATTTTTTCCAGGCACTTTCCGCTGCAG---TTGTTGTGCTGACAATAGTCCCATCTAGGTCAAAAAGACAAAGATCTACTGAAAATTGTGGCAtt
s Spar.gi_29362604 100946 97 - 143114 CG--ACATAGTTTTTTCCAGGCACTTTCAGCTGCGG---TTGTTGTGCTAACAATGGTCCCATCTAGGTCAAAAAGGCAGAGATCTACTGAAAATTGTGGCA--