##aligner=lastz.v1.02.00 C=2 E=30 O=400 Q=/home/wangq/Scripts/egaz/matrix/similar K=3000 Y=3400 L=2200 --ambiguous=iupac
##aligner=lastz.v1.02.00 Q=/home/wangq/Scripts/egaz/matrix/similar K=3000 Y=3400 L=2200 C=2 E=30 O=400 --ambiguous=iupac
##blastzParms=O=400,E=30,K=3000,L=3000,M=0
##gapPenalties=axtChain O=400 E=30
##gapPenalties=blastz O=400 E=30
##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##matrix=blastz 16 100,-300,-150,-300,-300,100,-300,-150,-150,-300,100,-300,-300,-150,-300,100
4 I 2717 2798 scaffold_14 3634 3714 + 5667
ACTTGTGAACTCTCGGCAAATGCCTTGGTGCAATTACGTAATTTTAGCCGCTGAGAAGCGGATGGTAATGAGACAAGTTGAT
ATTTGTGAATTCTCCGCGAATGCCTTGGTGCAATTACGTAATTGTAGCCGCTGA-AGGCGGATGGTTTTGAGAGAAGTTGAT
22 I 201838 201959 scaffold_17 174845 174965 - 5565
AATTACAAGTAATTACTTGTAGGAACATCCTCTACTAGTGAATATGAAAGAGCAGAG---GTTAGCTCCGTCTC--AACCAATTTTGTACAAGTCGTTGAAAAG--GACGGCTCTACTGTAGACAGGTC
AATTACAAATCATCACTTTCATGAACATCCTCTACTAGCTATTATGAAGGCGCAGAGAGTG--------GTCTCGTAACCAATTTTATGCAAGTCGTTGAAAAAACGGCGGCTCTTTAGTAGACTGGTC