innodb-utils 5.1.0

InnoDB file analysis toolkit
Documentation
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
use std::io::Write;
use std::path::Path;
use std::sync::Arc;

use colored::Colorize;
use rayon::prelude::*;
use serde::Serialize;

use crate::cli::{create_progress_bar, wprintln};
use crate::innodb::checksum::{validate_checksum, validate_lsn, ChecksumAlgorithm};
use crate::innodb::write;
use crate::util::audit::AuditLogger;
use crate::util::fs::find_tablespace_files;
use crate::IdbError;

/// Options for the `inno repair` subcommand.
pub struct RepairOptions {
    /// Path to the InnoDB tablespace file (.ibd).
    pub file: Option<String>,
    /// Repair all .ibd files under a data directory.
    pub batch: Option<String>,
    /// Repair only a specific page number.
    pub page: Option<u64>,
    /// Checksum algorithm to use: "auto", "crc32c", "innodb", "full_crc32".
    pub algorithm: String,
    /// Skip creating a backup before repair.
    pub no_backup: bool,
    /// Show what would be repaired without modifying the file.
    pub dry_run: bool,
    /// Show per-page details.
    pub verbose: bool,
    /// Emit output as JSON.
    pub json: bool,
    /// Override the auto-detected page size.
    pub page_size: Option<u32>,
    /// Path to MySQL keyring file for decrypting encrypted tablespaces.
    pub keyring: Option<String>,
    /// Use memory-mapped I/O for file access.
    pub mmap: bool,
    /// Audit logger for recording write operations.
    pub audit_logger: Option<Arc<AuditLogger>>,
}

#[derive(Serialize)]
struct RepairReport {
    file: String,
    #[serde(skip_serializing_if = "Option::is_none")]
    backup_path: Option<String>,
    algorithm: String,
    dry_run: bool,
    total_pages: u64,
    already_valid: u64,
    repaired: u64,
    empty: u64,
    pages: Vec<PageRepairInfo>,
}

#[derive(Serialize)]
struct PageRepairInfo {
    page_number: u64,
    action: String,
    #[serde(skip_serializing_if = "Option::is_none")]
    old_checksum: Option<u32>,
    #[serde(skip_serializing_if = "Option::is_none")]
    new_checksum: Option<u32>,
}

/// Parse an algorithm string into a ChecksumAlgorithm.
fn parse_algorithm(s: &str) -> Result<Option<ChecksumAlgorithm>, IdbError> {
    match s.to_lowercase().as_str() {
        "auto" => Ok(None),
        "crc32c" | "crc32" => Ok(Some(ChecksumAlgorithm::Crc32c)),
        "innodb" | "legacy" => Ok(Some(ChecksumAlgorithm::InnoDB)),
        "full_crc32" | "mariadb" => Ok(Some(ChecksumAlgorithm::MariaDbFullCrc32)),
        _ => Err(IdbError::Argument(format!(
            "Unknown checksum algorithm '{}'. Use: auto, crc32c, innodb, full_crc32",
            s
        ))),
    }
}

fn algo_name(algorithm: ChecksumAlgorithm) -> &'static str {
    match algorithm {
        ChecksumAlgorithm::Crc32c => "crc32c",
        ChecksumAlgorithm::InnoDB => "innodb",
        ChecksumAlgorithm::MariaDbFullCrc32 => "full_crc32",
        ChecksumAlgorithm::None => "none",
    }
}

/// Recalculate and write correct checksums for corrupt pages.
pub fn execute(opts: &RepairOptions, writer: &mut dyn Write) -> Result<(), IdbError> {
    match (&opts.file, &opts.batch) {
        (Some(_), Some(_)) => {
            return Err(IdbError::Argument(
                "--file and --batch are mutually exclusive".to_string(),
            ));
        }
        (None, None) => {
            return Err(IdbError::Argument(
                "Either --file or --batch is required".to_string(),
            ));
        }
        (_, Some(_)) if opts.page.is_some() => {
            return Err(IdbError::Argument(
                "--page cannot be used with --batch".to_string(),
            ));
        }
        _ => {}
    }

    if opts.batch.is_some() {
        execute_batch(opts, writer)
    } else {
        execute_single(opts, writer)
    }
}

/// Repair a single tablespace file.
fn execute_single(opts: &RepairOptions, writer: &mut dyn Write) -> Result<(), IdbError> {
    let file = opts.file.as_ref().unwrap();

    // Open tablespace read-only to get metadata
    let mut ts = crate::cli::open_tablespace(file, opts.page_size, opts.mmap)?;

    if let Some(ref keyring_path) = opts.keyring {
        crate::cli::setup_decryption(&mut ts, keyring_path)?;
    }

    let page_size = ts.page_size();
    let page_count = ts.page_count();
    let vendor_info = ts.vendor_info().clone();

    // Determine algorithm
    let explicit_algo = parse_algorithm(&opts.algorithm)?;
    let algorithm = match explicit_algo {
        Some(algo) => algo,
        None => {
            // Auto-detect from page 0
            let page0 = ts.read_page(0)?;
            write::detect_algorithm(&page0, page_size, Some(&vendor_info))
        }
    };

    // Create backup unless --no-backup or --dry-run
    let backup_path = if !opts.no_backup && !opts.dry_run {
        let path = write::create_backup(file)?;
        if !opts.json {
            wprintln!(writer, "Backup created: {}", path.display())?;
        }
        if let Some(ref logger) = opts.audit_logger {
            let _ = logger.log_backup(file, &path.display().to_string());
        }
        Some(path)
    } else {
        None
    };

    // Determine page range
    let (start_page, end_page) = match opts.page {
        Some(p) => {
            if p >= page_count {
                return Err(IdbError::Argument(format!(
                    "Page {} out of range (tablespace has {} pages)",
                    p, page_count
                )));
            }
            (p, p + 1)
        }
        None => (0, page_count),
    };
    let scan_count = end_page - start_page;

    let pb = if !opts.json && scan_count > 1 && !opts.dry_run {
        Some(create_progress_bar(scan_count, "pages"))
    } else {
        None
    };

    let aname = algo_name(algorithm);

    if !opts.json && !opts.dry_run {
        wprintln!(writer, "Repairing {} using {} algorithm...", file, aname)?;
    } else if !opts.json && opts.dry_run {
        wprintln!(
            writer,
            "Dry run: scanning {} using {} algorithm...",
            file,
            aname
        )?;
    }

    let mut already_valid = 0u64;
    let mut repaired = 0u64;
    let mut empty = 0u64;
    let mut page_details: Vec<PageRepairInfo> = Vec::new();

    for page_num in start_page..end_page {
        let mut page_data = write::read_page_raw(file, page_num, page_size)?;

        // Check if page is empty (all zeros)
        if page_data.iter().all(|&b| b == 0) {
            empty += 1;
            if let Some(ref pb) = pb {
                pb.inc(1);
            }
            continue;
        }

        // Validate current checksum
        let result = validate_checksum(&page_data, page_size, Some(&vendor_info));
        let lsn_ok = validate_lsn(&page_data, page_size);

        if result.valid && lsn_ok {
            already_valid += 1;
            if let Some(ref pb) = pb {
                pb.inc(1);
            }
            continue;
        }

        // Page needs repair
        let (old_checksum, new_checksum) =
            write::fix_page_checksum(&mut page_data, page_size, algorithm);

        if !opts.dry_run {
            write::write_page(file, page_num, page_size, &page_data)?;
            if let Some(ref logger) = opts.audit_logger {
                let _ = logger.log_page_write(
                    file,
                    page_num,
                    "repair",
                    Some(old_checksum),
                    Some(new_checksum),
                );
            }
        }

        repaired += 1;

        if opts.verbose && !opts.json {
            let action = if opts.dry_run {
                "would repair"
            } else {
                "repaired"
            };
            let mut detail = format!(
                "Page {:>4}: {} (0x{:08X} -> 0x{:08X})",
                page_num, action, old_checksum, new_checksum
            );
            if !result.valid {
                detail.push_str(" [checksum mismatch]");
            }
            if !lsn_ok {
                detail.push_str(" [LSN mismatch]");
            }
            wprintln!(writer, "{}", detail)?;
        }

        page_details.push(PageRepairInfo {
            page_number: page_num,
            action: if opts.dry_run {
                "would_repair".to_string()
            } else {
                "repaired".to_string()
            },
            old_checksum: Some(old_checksum),
            new_checksum: Some(new_checksum),
        });

        if let Some(ref pb) = pb {
            pb.inc(1);
        }
    }

    if let Some(pb) = pb {
        pb.finish_and_clear();
    }

    if opts.json {
        let report = RepairReport {
            file: file.clone(),
            backup_path: backup_path.map(|p| p.display().to_string()),
            algorithm: aname.to_string(),
            dry_run: opts.dry_run,
            total_pages: scan_count,
            already_valid,
            repaired,
            empty,
            pages: page_details,
        };
        let json = serde_json::to_string_pretty(&report)
            .map_err(|e| IdbError::Parse(format!("JSON serialization error: {}", e)))?;
        wprintln!(writer, "{}", json)?;
    } else {
        wprintln!(writer)?;
        wprintln!(writer, "Repair Summary:")?;
        wprintln!(writer, "  Algorithm:     {}", aname)?;
        wprintln!(writer, "  Total pages:   {:>4}", scan_count)?;
        wprintln!(writer, "  Already valid: {:>4}", already_valid)?;
        if repaired > 0 {
            let label = if opts.dry_run {
                "Would repair"
            } else {
                "Repaired"
            };
            wprintln!(
                writer,
                "  {}:     {:>4}",
                label,
                format!("{}", repaired).green()
            )?;
        } else {
            wprintln!(writer, "  Repaired:      {:>4}", repaired)?;
        }
        wprintln!(writer, "  Empty:         {:>4}", empty)?;
    }

    Ok(())
}

// ---------------------------------------------------------------------------
// Batch repair mode (#89)
// ---------------------------------------------------------------------------

#[derive(Serialize)]
struct BatchRepairReport {
    datadir: String,
    dry_run: bool,
    algorithm: String,
    files: Vec<FileRepairResult>,
    summary: BatchRepairSummary,
}

#[derive(Serialize, Clone)]
struct FileRepairResult {
    file: String,
    #[serde(skip_serializing_if = "Option::is_none")]
    backup_path: Option<String>,
    total_pages: u64,
    already_valid: u64,
    repaired: u64,
    empty: u64,
    #[serde(skip_serializing_if = "Vec::is_empty")]
    errors: Vec<String>,
}

#[derive(Serialize)]
struct BatchRepairSummary {
    total_files: usize,
    files_repaired: usize,
    files_already_valid: usize,
    files_error: usize,
    total_pages_scanned: u64,
    total_pages_repaired: u64,
}

/// Repair a single file for batch mode. Returns the result for aggregation.
#[allow(clippy::too_many_arguments)]
fn repair_file(
    path: &Path,
    datadir: &Path,
    explicit_algo: Option<ChecksumAlgorithm>,
    no_backup: bool,
    dry_run: bool,
    page_size_override: Option<u32>,
    keyring: &Option<String>,
    use_mmap: bool,
    audit_logger: &Option<Arc<AuditLogger>>,
) -> FileRepairResult {
    let display = path.strip_prefix(datadir).unwrap_or(path);
    let display_str = display.display().to_string();
    let path_str = path.to_string_lossy().to_string();

    let mut ts = match crate::cli::open_tablespace(&path_str, page_size_override, use_mmap) {
        Ok(t) => t,
        Err(e) => {
            return FileRepairResult {
                file: display_str,
                backup_path: None,
                total_pages: 0,
                already_valid: 0,
                repaired: 0,
                empty: 0,
                errors: vec![e.to_string()],
            };
        }
    };

    if let Some(ref kp) = keyring {
        let _ = crate::cli::setup_decryption(&mut ts, kp);
    }

    let page_size = ts.page_size();
    let page_count = ts.page_count();
    let vendor_info = ts.vendor_info().clone();

    // Determine algorithm
    let algorithm = match explicit_algo {
        Some(algo) => algo,
        None => {
            let page0 = match ts.read_page(0) {
                Ok(p) => p,
                Err(e) => {
                    return FileRepairResult {
                        file: display_str,
                        backup_path: None,
                        total_pages: page_count,
                        already_valid: 0,
                        repaired: 0,
                        empty: 0,
                        errors: vec![e.to_string()],
                    };
                }
            };
            write::detect_algorithm(&page0, page_size, Some(&vendor_info))
        }
    };

    // Create backup unless --no-backup or --dry-run
    let backup_path = if !no_backup && !dry_run {
        match write::create_backup(&path_str) {
            Ok(bp) => {
                if let Some(ref logger) = audit_logger {
                    let _ = logger.log_backup(&path_str, &bp.display().to_string());
                }
                Some(bp.display().to_string())
            }
            Err(e) => {
                return FileRepairResult {
                    file: display_str,
                    backup_path: None,
                    total_pages: page_count,
                    already_valid: 0,
                    repaired: 0,
                    empty: 0,
                    errors: vec![format!("Backup failed: {}", e)],
                };
            }
        }
    } else {
        None
    };

    let mut already_valid = 0u64;
    let mut repaired = 0u64;
    let mut empty = 0u64;
    let mut errors = Vec::new();

    for page_num in 0..page_count {
        let mut page_data = match write::read_page_raw(&path_str, page_num, page_size) {
            Ok(d) => d,
            Err(e) => {
                errors.push(format!("Page {}: {}", page_num, e));
                continue;
            }
        };

        if page_data.iter().all(|&b| b == 0) {
            empty += 1;
            continue;
        }

        let result = validate_checksum(&page_data, page_size, Some(&vendor_info));
        let lsn_ok = validate_lsn(&page_data, page_size);

        if result.valid && lsn_ok {
            already_valid += 1;
            continue;
        }

        let (old_checksum, new_checksum) =
            write::fix_page_checksum(&mut page_data, page_size, algorithm);

        if !dry_run {
            if let Err(e) = write::write_page(&path_str, page_num, page_size, &page_data) {
                errors.push(format!("Page {}: write failed: {}", page_num, e));
                continue;
            }
            if let Some(ref logger) = audit_logger {
                let _ = logger.log_page_write(
                    &path_str,
                    page_num,
                    "batch_repair",
                    Some(old_checksum),
                    Some(new_checksum),
                );
            }
        }

        repaired += 1;
    }

    FileRepairResult {
        file: display_str,
        backup_path,
        total_pages: page_count,
        already_valid,
        repaired,
        empty,
        errors,
    }
}

/// Repair all .ibd files under a data directory.
fn execute_batch(opts: &RepairOptions, writer: &mut dyn Write) -> Result<(), IdbError> {
    let datadir_str = opts.batch.as_ref().unwrap();
    let datadir = Path::new(datadir_str);

    if !datadir.is_dir() {
        return Err(IdbError::Argument(format!(
            "Data directory does not exist: {}",
            datadir_str
        )));
    }

    let ibd_files = find_tablespace_files(datadir, &["ibd"], None)?;

    if ibd_files.is_empty() {
        if opts.json {
            let report = BatchRepairReport {
                datadir: datadir_str.clone(),
                dry_run: opts.dry_run,
                algorithm: opts.algorithm.clone(),
                files: Vec::new(),
                summary: BatchRepairSummary {
                    total_files: 0,
                    files_repaired: 0,
                    files_already_valid: 0,
                    files_error: 0,
                    total_pages_scanned: 0,
                    total_pages_repaired: 0,
                },
            };
            let json = serde_json::to_string_pretty(&report)
                .map_err(|e| IdbError::Parse(format!("JSON serialization error: {}", e)))?;
            wprintln!(writer, "{}", json)?;
        } else {
            wprintln!(writer, "No .ibd files found in {}", datadir_str)?;
        }
        return Ok(());
    }

    let explicit_algo = parse_algorithm(&opts.algorithm)?;

    let pb = if !opts.json {
        Some(create_progress_bar(ibd_files.len() as u64, "files"))
    } else {
        None
    };

    let page_size = opts.page_size;
    let keyring = opts.keyring.clone();
    let use_mmap = opts.mmap;
    let no_backup = opts.no_backup;
    let dry_run = opts.dry_run;
    let audit_logger = opts.audit_logger.clone();

    let mut results: Vec<FileRepairResult> = ibd_files
        .par_iter()
        .map(|path| {
            let r = repair_file(
                path,
                datadir,
                explicit_algo,
                no_backup,
                dry_run,
                page_size,
                &keyring,
                use_mmap,
                &audit_logger,
            );
            if let Some(ref pb) = pb {
                pb.inc(1);
            }
            r
        })
        .collect();

    if let Some(ref pb) = pb {
        pb.finish_and_clear();
    }

    results.sort_by(|a, b| a.file.cmp(&b.file));

    // Compute summary
    let total_files = results.len();
    let files_repaired = results.iter().filter(|r| r.repaired > 0).count();
    let files_already_valid = results
        .iter()
        .filter(|r| r.repaired == 0 && r.errors.is_empty())
        .count();
    let files_error = results.iter().filter(|r| !r.errors.is_empty()).count();
    let total_pages_scanned: u64 = results.iter().map(|r| r.total_pages).sum();
    let total_pages_repaired: u64 = results.iter().map(|r| r.repaired).sum();

    let aname = match explicit_algo {
        Some(a) => algo_name(a).to_string(),
        None => "auto".to_string(),
    };

    if opts.json {
        let report = BatchRepairReport {
            datadir: datadir_str.clone(),
            dry_run: opts.dry_run,
            algorithm: aname,
            files: results,
            summary: BatchRepairSummary {
                total_files,
                files_repaired,
                files_already_valid,
                files_error,
                total_pages_scanned,
                total_pages_repaired,
            },
        };
        let json = serde_json::to_string_pretty(&report)
            .map_err(|e| IdbError::Parse(format!("JSON serialization error: {}", e)))?;
        wprintln!(writer, "{}", json)?;
    } else {
        let mode = if opts.dry_run {
            "Dry run"
        } else {
            "Batch repair"
        };
        wprintln!(
            writer,
            "{}: {} ({} files)\n",
            mode,
            datadir_str,
            total_files
        )?;

        for r in &results {
            if !r.errors.is_empty() {
                wprintln!(
                    writer,
                    "  {:<40} {}   {}",
                    r.file,
                    "ERROR".yellow(),
                    r.errors[0]
                )?;
            } else if r.repaired > 0 {
                let label = if opts.dry_run {
                    format!("would repair {} pages", r.repaired)
                } else {
                    format!("repaired {} pages", r.repaired)
                };
                wprintln!(writer, "  {:<40} {}", r.file, label.green())?;
            } else {
                wprintln!(writer, "  {:<40} OK", r.file)?;
            }
        }

        wprintln!(writer)?;
        wprintln!(writer, "Summary:")?;
        wprintln!(
            writer,
            "  Files: {} ({} repaired, {} already valid{})",
            total_files,
            files_repaired,
            files_already_valid,
            if files_error > 0 {
                format!(", {} error", files_error)
            } else {
                String::new()
            }
        )?;
        wprintln!(
            writer,
            "  Pages: {} scanned, {} repaired",
            total_pages_scanned,
            total_pages_repaired
        )?;
    }

    Ok(())
}