fhir-types 0.1.115

// @generated by fhir-codegen from hl7.fhir.r5.core 5.0.0. DO NOT EDIT.
// Change the emitter (tools/fhir-codegen) and regenerate.
// SPDX-FileCopyrightText: Cadasto B.V.
// SPDX-License-Identifier: Apache-2.0
//! Genomic Study

/// Genomic Study
///
/// A GenomicStudy is a set of analyses performed to analyze and generate
/// genomic data.
#[derive(Debug, Clone, Default, PartialEq, Eq)]
pub struct GenomicStudy {
    /// Logical id of this artifact
    ///
    /// The logical id of the resource, as used in the URL for the resource. Once
    /// assigned, this value never changes.
    pub id: Option<std::string::String>,
    /// Metadata about the resource
    ///
    /// The metadata about the resource. This is content that is maintained by the
    /// infrastructure. Changes to the content might not always be associated with
    /// version changes to the resource.
    pub meta: Option<super::meta::Meta>,
    /// A set of rules under which this content was created
    ///
    /// A reference to a set of rules that were followed when the resource was
    /// constructed, and which must be understood when processing the content.
    /// Often, this is a reference to an implementation guide that defines the
    /// special rules along with other profiles etc.
    pub implicit_rules: Option<super::primitives::Uri>,
    /// Language of the resource content
    ///
    /// The base language in which the resource is written.
    pub language: Option<super::primitives::Code>,
    /// Text summary of the resource, for human interpretation
    ///
    /// A human-readable narrative that contains a summary of the resource and can
    /// be used to represent the content of the resource to a human. The narrative
    /// need not encode all the structured data, but is required to contain
    /// sufficient detail to make it "clinically safe" for a human to just read the
    /// narrative. Resource definitions may define what content should be
    /// represented in the narrative to ensure clinical safety.
    pub text: Option<super::narrative::Narrative>,
    /// Contained, inline Resources
    ///
    /// These resources do not have an independent existence apart from the resource
    /// that contains them - they cannot be identified independently, nor can they
    /// have their own independent transaction scope. This is allowed to be a
    /// Parameters resource if and only if it is referenced by a resource that
    /// provides context/meaning.
    pub contained: Vec<super::resource::Resource>,
    /// Additional content defined by implementations
    ///
    /// May be used to represent additional information that is not part of the
    /// basic definition of the resource. To make the use of extensions safe and
    /// managable, there is a strict set of governance applied to the definition and
    /// use of extensions. Though any implementer can define an extension, there is
    /// a set of requirements that SHALL be met as part of the definition of the
    /// extension.
    pub extension: Vec<super::extension::Extension>,
    /// Extensions that cannot be ignored
    ///
    /// May be used to represent additional information that is not part of the
    /// basic definition of the resource and that modifies the understanding of the
    /// element that contains it and/or the understanding of the containing
    /// element's descendants. Usually modifier elements provide negation or
    /// qualification. To make the use of extensions safe and managable, there is a
    /// strict set of governance applied to the definition and use of extensions.
    /// Though any implementer is allowed to define an extension, there is a set of
    /// requirements that SHALL be met as part of the definition of the extension.
    /// Applications processing a resource are required to check for modifier
    /// extensions. Modifier extensions SHALL NOT change the meaning of any elements
    /// on Resource or DomainResource (including cannot change the meaning of
    /// modifierExtension itself).
    pub modifier_extension: Vec<super::extension::Extension>,
    /// Identifiers for this genomic study.
    pub identifier: Vec<super::identifier::Identifier>,
    /// registered | available | cancelled | entered-in-error | unknown
    ///
    /// The status of the genomic study.
    pub status: super::primitives::Code,
    /// The type of the study (e.g., Familial variant segregation, Functional
    /// variation detection, or Gene expression profiling)
    ///
    /// The type of the study, e.g., Familial variant segregation, Functional
    /// variation detection, or Gene expression profiling.
    pub r#type: Vec<super::codeable_concept::CodeableConcept>,
    /// The primary subject of the genomic study.
    pub subject: super::reference::Reference,
    /// The healthcare event with which this genomics study is associated.
    pub encounter: Option<super::reference::Reference>,
    /// When the genomic study was started.
    pub start_date: Option<super::primitives::DateTime>,
    /// Event resources that the genomic study is based on.
    pub based_on: Vec<super::reference::Reference>,
    /// Healthcare professional who requested or referred the genomic study.
    pub referrer: Option<super::reference::Reference>,
    /// Healthcare professionals who interpreted the genomic study.
    pub interpreter: Vec<super::reference::Reference>,
    /// Why the genomic study was performed.
    pub reason: Vec<super::codeable_reference::CodeableReference>,
    /// The defined protocol that describes the study.
    pub instantiates_canonical: Option<super::primitives::Canonical>,
    /// The URL pointing to an externally maintained protocol that describes the
    /// study.
    pub instantiates_uri: Option<super::primitives::Uri>,
    /// Comments related to the genomic study.
    pub note: Vec<super::annotation::Annotation>,
    /// Description of the genomic study.
    pub description: Option<super::primitives::Markdown>,
    /// Genomic Analysis Event
    ///
    /// The details about a specific analysis that was performed in this
    /// GenomicStudy.
    pub analysis: Vec<GenomicStudyAnalysis>,
}

impl super::super::codec::Json for GenomicStudy {
    fn to_json(&self) -> Result<super::super::codec::Object, super::super::codec::EncodeError> {
        let mut object = super::super::codec::Object::new();
        object.insert(
            std::string::String::from("resourceType"),
            super::super::codec::Value::String(std::string::String::from("GenomicStudy")),
        );
        if let Some(v) = &self.id {
            object.insert(
                std::string::String::from("id"),
                super::super::codec::Value::String(v.clone()),
            );
        }
        if let Some(item) = &self.meta {
            object.insert(
                std::string::String::from("meta"),
                super::super::codec::Value::Object(super::super::codec::Json::to_json(item)?),
            );
        }
        if let Some(item) = &self.implicit_rules {
            if let Some(v) = super::super::codec::Primitive::value_json(item)? {
                object.insert(std::string::String::from("implicitRules"), v);
            }
            if let Some(e) = super::super::codec::Primitive::element_json(item)? {
                object.insert(std::string::String::from("_implicitRules"), e);
            }
        }
        if let Some(item) = &self.language {
            if let Some(v) = super::super::codec::Primitive::value_json(item)? {
                object.insert(std::string::String::from("language"), v);
            }
            if let Some(e) = super::super::codec::Primitive::element_json(item)? {
                object.insert(std::string::String::from("_language"), e);
            }
        }
        if let Some(item) = &self.text {
            object.insert(
                std::string::String::from("text"),
                super::super::codec::Value::Object(super::super::codec::Json::to_json(item)?),
            );
        }
        if !self.contained.is_empty() {
            let mut items = Vec::with_capacity(self.contained.len());
            for item in &self.contained {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("contained"),
                super::super::codec::Value::Array(items),
            );
        }
        if !self.extension.is_empty() {
            let mut items = Vec::with_capacity(self.extension.len());
            for item in &self.extension {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("extension"),
                super::super::codec::Value::Array(items),
            );
        }
        if !self.modifier_extension.is_empty() {
            let mut items = Vec::with_capacity(self.modifier_extension.len());
            for item in &self.modifier_extension {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("modifierExtension"),
                super::super::codec::Value::Array(items),
            );
        }
        if !self.identifier.is_empty() {
            let mut items = Vec::with_capacity(self.identifier.len());
            for item in &self.identifier {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("identifier"),
                super::super::codec::Value::Array(items),
            );
        }
        if let Some(v) = super::super::codec::Primitive::value_json(&self.status)? {
            object.insert(std::string::String::from("status"), v);
        }
        if let Some(e) = super::super::codec::Primitive::element_json(&self.status)? {
            object.insert(std::string::String::from("_status"), e);
        }
        if !self.r#type.is_empty() {
            let mut items = Vec::with_capacity(self.r#type.len());
            for item in &self.r#type {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("type"),
                super::super::codec::Value::Array(items),
            );
        }
        object.insert(
            std::string::String::from("subject"),
            super::super::codec::Value::Object(super::super::codec::Json::to_json(&self.subject)?),
        );
        if let Some(item) = &self.encounter {
            object.insert(
                std::string::String::from("encounter"),
                super::super::codec::Value::Object(super::super::codec::Json::to_json(item)?),
            );
        }
        if let Some(item) = &self.start_date {
            if let Some(v) = super::super::codec::Primitive::value_json(item)? {
                object.insert(std::string::String::from("startDate"), v);
            }
            if let Some(e) = super::super::codec::Primitive::element_json(item)? {
                object.insert(std::string::String::from("_startDate"), e);
            }
        }
        if !self.based_on.is_empty() {
            let mut items = Vec::with_capacity(self.based_on.len());
            for item in &self.based_on {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("basedOn"),
                super::super::codec::Value::Array(items),
            );
        }
        if let Some(item) = &self.referrer {
            object.insert(
                std::string::String::from("referrer"),
                super::super::codec::Value::Object(super::super::codec::Json::to_json(item)?),
            );
        }
        if !self.interpreter.is_empty() {
            let mut items = Vec::with_capacity(self.interpreter.len());
            for item in &self.interpreter {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("interpreter"),
                super::super::codec::Value::Array(items),
            );
        }
        if !self.reason.is_empty() {
            let mut items = Vec::with_capacity(self.reason.len());
            for item in &self.reason {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("reason"),
                super::super::codec::Value::Array(items),
            );
        }
        if let Some(item) = &self.instantiates_canonical {
            if let Some(v) = super::super::codec::Primitive::value_json(item)? {
                object.insert(std::string::String::from("instantiatesCanonical"), v);
            }
            if let Some(e) = super::super::codec::Primitive::element_json(item)? {
                object.insert(std::string::String::from("_instantiatesCanonical"), e);
            }
        }
        if let Some(item) = &self.instantiates_uri {
            if let Some(v) = super::super::codec::Primitive::value_json(item)? {
                object.insert(std::string::String::from("instantiatesUri"), v);
            }
            if let Some(e) = super::super::codec::Primitive::element_json(item)? {
                object.insert(std::string::String::from("_instantiatesUri"), e);
            }
        }
        if !self.note.is_empty() {
            let mut items = Vec::with_capacity(self.note.len());
            for item in &self.note {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("note"),
                super::super::codec::Value::Array(items),
            );
        }
        if let Some(item) = &self.description {
            if let Some(v) = super::super::codec::Primitive::value_json(item)? {
                object.insert(std::string::String::from("description"), v);
            }
            if let Some(e) = super::super::codec::Primitive::element_json(item)? {
                object.insert(std::string::String::from("_description"), e);
            }
        }
        if !self.analysis.is_empty() {
            let mut items = Vec::with_capacity(self.analysis.len());
            for item in &self.analysis {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("analysis"),
                super::super::codec::Value::Array(items),
            );
        }
        Ok(object)
    }

    fn from_json(
        object: &super::super::codec::Object,
        path: &mut super::super::codec::Path,
    ) -> Result<Self, super::super::codec::DecodeError> {
        let mut raw_id: Option<&super::super::codec::Value> = None;
        let mut raw_meta: Option<&super::super::codec::Value> = None;
        let mut raw_implicit_rules: Option<&super::super::codec::Value> = None;
        let mut raw_implicit_rules_element: Option<&super::super::codec::Value> = None;
        let mut raw_language: Option<&super::super::codec::Value> = None;
        let mut raw_language_element: Option<&super::super::codec::Value> = None;
        let mut raw_text: Option<&super::super::codec::Value> = None;
        let mut raw_contained: Option<&super::super::codec::Value> = None;
        let mut raw_extension: Option<&super::super::codec::Value> = None;
        let mut raw_modifier_extension: Option<&super::super::codec::Value> = None;
        let mut raw_identifier: Option<&super::super::codec::Value> = None;
        let mut raw_status: Option<&super::super::codec::Value> = None;
        let mut raw_status_element: Option<&super::super::codec::Value> = None;
        let mut raw_type: Option<&super::super::codec::Value> = None;
        let mut raw_subject: Option<&super::super::codec::Value> = None;
        let mut raw_encounter: Option<&super::super::codec::Value> = None;
        let mut raw_start_date: Option<&super::super::codec::Value> = None;
        let mut raw_start_date_element: Option<&super::super::codec::Value> = None;
        let mut raw_based_on: Option<&super::super::codec::Value> = None;
        let mut raw_referrer: Option<&super::super::codec::Value> = None;
        let mut raw_interpreter: Option<&super::super::codec::Value> = None;
        let mut raw_reason: Option<&super::super::codec::Value> = None;
        let mut raw_instantiates_canonical: Option<&super::super::codec::Value> = None;
        let mut raw_instantiates_canonical_element: Option<&super::super::codec::Value> = None;
        let mut raw_instantiates_uri: Option<&super::super::codec::Value> = None;
        let mut raw_instantiates_uri_element: Option<&super::super::codec::Value> = None;
        let mut raw_note: Option<&super::super::codec::Value> = None;
        let mut raw_description: Option<&super::super::codec::Value> = None;
        let mut raw_description_element: Option<&super::super::codec::Value> = None;
        let mut raw_analysis: Option<&super::super::codec::Value> = None;
        for (key, value) in object {
            match key.as_str() {
                "resourceType" => {
                    if value.as_str() != Some("GenomicStudy") {
                        return Err(path.error(super::super::codec::DecodeErrorKind::ResourceType));
                    }
                }
                "id" => {
                    raw_id = Some(value);
                }
                "meta" => {
                    raw_meta = Some(value);
                }
                "implicitRules" => {
                    raw_implicit_rules = Some(value);
                }
                "_implicitRules" => {
                    raw_implicit_rules_element = Some(value);
                }
                "language" => {
                    raw_language = Some(value);
                }
                "_language" => {
                    raw_language_element = Some(value);
                }
                "text" => {
                    raw_text = Some(value);
                }
                "contained" => {
                    raw_contained = Some(value);
                }
                "extension" => {
                    raw_extension = Some(value);
                }
                "modifierExtension" => {
                    raw_modifier_extension = Some(value);
                }
                "identifier" => {
                    raw_identifier = Some(value);
                }
                "status" => {
                    raw_status = Some(value);
                }
                "_status" => {
                    raw_status_element = Some(value);
                }
                "type" => {
                    raw_type = Some(value);
                }
                "subject" => {
                    raw_subject = Some(value);
                }
                "encounter" => {
                    raw_encounter = Some(value);
                }
                "startDate" => {
                    raw_start_date = Some(value);
                }
                "_startDate" => {
                    raw_start_date_element = Some(value);
                }
                "basedOn" => {
                    raw_based_on = Some(value);
                }
                "referrer" => {
                    raw_referrer = Some(value);
                }
                "interpreter" => {
                    raw_interpreter = Some(value);
                }
                "reason" => {
                    raw_reason = Some(value);
                }
                "instantiatesCanonical" => {
                    raw_instantiates_canonical = Some(value);
                }
                "_instantiatesCanonical" => {
                    raw_instantiates_canonical_element = Some(value);
                }
                "instantiatesUri" => {
                    raw_instantiates_uri = Some(value);
                }
                "_instantiatesUri" => {
                    raw_instantiates_uri_element = Some(value);
                }
                "note" => {
                    raw_note = Some(value);
                }
                "description" => {
                    raw_description = Some(value);
                }
                "_description" => {
                    raw_description_element = Some(value);
                }
                "analysis" => {
                    raw_analysis = Some(value);
                }
                other => {
                    return path.with(other, |path| {
                        Err(path.error(super::super::codec::DecodeErrorKind::UnknownProperty))
                    });
                }
            }
        }
        let field_id = raw_id
            .map(|value| {
                path.with("id", |path| {
                    let value = super::super::codec::expect_single(value, path)?;
                    super::primitives::checked_id(
                        super::super::codec::expect_string(value, path)?,
                        path,
                    )
                })
            })
            .transpose()?;
        let field_meta = raw_meta
            .map(|value| {
                path.with("meta", |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(
                            super::super::codec::expect_single(value, path)?,
                            path,
                        )?,
                        path,
                    )
                })
            })
            .transpose()?;
        let field_implicit_rules = match (raw_implicit_rules, raw_implicit_rules_element) {
            (None, None) => None,
            (value, element) => Some(path.with("implicitRules", |path| {
                super::super::codec::Primitive::from_json_parts(value, element, path)
            })?),
        };
        let field_language = match (raw_language, raw_language_element) {
            (None, None) => None,
            (value, element) => Some(path.with("language", |path| {
                super::super::codec::Primitive::from_json_parts(value, element, path)
            })?),
        };
        let field_text = raw_text
            .map(|value| {
                path.with("text", |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(
                            super::super::codec::expect_single(value, path)?,
                            path,
                        )?,
                        path,
                    )
                })
            })
            .transpose()?;
        let mut field_contained = Vec::new();
        if let Some(raw) = raw_contained {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_contained.push(path.with_index("contained", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let mut field_extension = Vec::new();
        if let Some(raw) = raw_extension {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_extension.push(path.with_index("extension", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let mut field_modifier_extension = Vec::new();
        if let Some(raw) = raw_modifier_extension {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_modifier_extension.push(path.with_index(
                    "modifierExtension",
                    index,
                    |path| {
                        super::super::codec::Json::from_json(
                            super::super::codec::expect_object(value, path)?,
                            path,
                        )
                    },
                )?);
            }
        }
        let mut field_identifier = Vec::new();
        if let Some(raw) = raw_identifier {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_identifier.push(path.with_index("identifier", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let field_status = path.with("status", |path| {
            super::super::codec::Primitive::from_json_parts(raw_status, raw_status_element, path)
        })?;
        let mut field_type = Vec::new();
        if let Some(raw) = raw_type {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_type.push(path.with_index("type", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let field_subject = path.with("subject", |path| {
            let value = raw_subject
                .ok_or_else(|| path.error(super::super::codec::DecodeErrorKind::MissingProperty))?;
            super::super::codec::Json::from_json(
                super::super::codec::expect_object(
                    super::super::codec::expect_single(value, path)?,
                    path,
                )?,
                path,
            )
        })?;
        let field_encounter = raw_encounter
            .map(|value| {
                path.with("encounter", |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(
                            super::super::codec::expect_single(value, path)?,
                            path,
                        )?,
                        path,
                    )
                })
            })
            .transpose()?;
        let field_start_date = match (raw_start_date, raw_start_date_element) {
            (None, None) => None,
            (value, element) => Some(path.with("startDate", |path| {
                super::super::codec::Primitive::from_json_parts(value, element, path)
            })?),
        };
        let mut field_based_on = Vec::new();
        if let Some(raw) = raw_based_on {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_based_on.push(path.with_index("basedOn", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let field_referrer = raw_referrer
            .map(|value| {
                path.with("referrer", |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(
                            super::super::codec::expect_single(value, path)?,
                            path,
                        )?,
                        path,
                    )
                })
            })
            .transpose()?;
        let mut field_interpreter = Vec::new();
        if let Some(raw) = raw_interpreter {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_interpreter.push(path.with_index("interpreter", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let mut field_reason = Vec::new();
        if let Some(raw) = raw_reason {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_reason.push(path.with_index("reason", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let field_instantiates_canonical = match (
            raw_instantiates_canonical,
            raw_instantiates_canonical_element,
        ) {
            (None, None) => None,
            (value, element) => Some(path.with("instantiatesCanonical", |path| {
                super::super::codec::Primitive::from_json_parts(value, element, path)
            })?),
        };
        let field_instantiates_uri = match (raw_instantiates_uri, raw_instantiates_uri_element) {
            (None, None) => None,
            (value, element) => Some(path.with("instantiatesUri", |path| {
                super::super::codec::Primitive::from_json_parts(value, element, path)
            })?),
        };
        let mut field_note = Vec::new();
        if let Some(raw) = raw_note {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_note.push(path.with_index("note", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let field_description = match (raw_description, raw_description_element) {
            (None, None) => None,
            (value, element) => Some(path.with("description", |path| {
                super::super::codec::Primitive::from_json_parts(value, element, path)
            })?),
        };
        let mut field_analysis = Vec::new();
        if let Some(raw) = raw_analysis {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_analysis.push(path.with_index("analysis", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        Ok(Self {
            id: field_id,
            meta: field_meta,
            implicit_rules: field_implicit_rules,
            language: field_language,
            text: field_text,
            contained: field_contained,
            extension: field_extension,
            modifier_extension: field_modifier_extension,
            identifier: field_identifier,
            status: field_status,
            r#type: field_type,
            subject: field_subject,
            encounter: field_encounter,
            start_date: field_start_date,
            based_on: field_based_on,
            referrer: field_referrer,
            interpreter: field_interpreter,
            reason: field_reason,
            instantiates_canonical: field_instantiates_canonical,
            instantiates_uri: field_instantiates_uri,
            note: field_note,
            description: field_description,
            analysis: field_analysis,
        })
    }
}

impl serde::Serialize for GenomicStudy {
    fn serialize<S: serde::Serializer>(&self, serializer: S) -> Result<S::Ok, S::Error> {
        let mut map = serde::Serializer::serialize_map(serializer, None)?;
        if let Some(item) = &self.description {
            super::super::codec::element_entry(&mut map, "_description", item)?;
        }
        if let Some(item) = &self.implicit_rules {
            super::super::codec::element_entry(&mut map, "_implicitRules", item)?;
        }
        if let Some(item) = &self.instantiates_canonical {
            super::super::codec::element_entry(&mut map, "_instantiatesCanonical", item)?;
        }
        if let Some(item) = &self.instantiates_uri {
            super::super::codec::element_entry(&mut map, "_instantiatesUri", item)?;
        }
        if let Some(item) = &self.language {
            super::super::codec::element_entry(&mut map, "_language", item)?;
        }
        if let Some(item) = &self.start_date {
            super::super::codec::element_entry(&mut map, "_startDate", item)?;
        }
        super::super::codec::element_entry(&mut map, "_status", &self.status)?;
        if !self.analysis.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "analysis", &self.analysis)?;
        }
        if !self.based_on.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "basedOn", &self.based_on)?;
        }
        if !self.contained.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "contained", &self.contained)?;
        }
        if let Some(item) = &self.description {
            super::super::codec::value_entry(&mut map, "description", item)?;
        }
        if let Some(item) = &self.encounter {
            serde::ser::SerializeMap::serialize_entry(&mut map, "encounter", item)?;
        }
        if !self.extension.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "extension", &self.extension)?;
        }
        if let Some(v) = &self.id {
            serde::ser::SerializeMap::serialize_entry(&mut map, "id", v)?;
        }
        if !self.identifier.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "identifier", &self.identifier)?;
        }
        if let Some(item) = &self.implicit_rules {
            super::super::codec::value_entry(&mut map, "implicitRules", item)?;
        }
        if let Some(item) = &self.instantiates_canonical {
            super::super::codec::value_entry(&mut map, "instantiatesCanonical", item)?;
        }
        if let Some(item) = &self.instantiates_uri {
            super::super::codec::value_entry(&mut map, "instantiatesUri", item)?;
        }
        if !self.interpreter.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "interpreter", &self.interpreter)?;
        }
        if let Some(item) = &self.language {
            super::super::codec::value_entry(&mut map, "language", item)?;
        }
        if let Some(item) = &self.meta {
            serde::ser::SerializeMap::serialize_entry(&mut map, "meta", item)?;
        }
        if !self.modifier_extension.is_empty() {
            serde::ser::SerializeMap::serialize_entry(
                &mut map,
                "modifierExtension",
                &self.modifier_extension,
            )?;
        }
        if !self.note.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "note", &self.note)?;
        }
        if !self.reason.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "reason", &self.reason)?;
        }
        if let Some(item) = &self.referrer {
            serde::ser::SerializeMap::serialize_entry(&mut map, "referrer", item)?;
        }
        serde::ser::SerializeMap::serialize_entry(&mut map, "resourceType", "GenomicStudy")?;
        if let Some(item) = &self.start_date {
            super::super::codec::value_entry(&mut map, "startDate", item)?;
        }
        super::super::codec::value_entry(&mut map, "status", &self.status)?;
        serde::ser::SerializeMap::serialize_entry(&mut map, "subject", &self.subject)?;
        if let Some(item) = &self.text {
            serde::ser::SerializeMap::serialize_entry(&mut map, "text", item)?;
        }
        if !self.r#type.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "type", &self.r#type)?;
        }
        serde::ser::SerializeMap::end(map)
    }
}

impl<'de> serde::Deserialize<'de> for GenomicStudy {
    fn deserialize<D: serde::Deserializer<'de>>(deserializer: D) -> Result<Self, D::Error> {
        let value = <super::super::codec::Value as serde::Deserialize>::deserialize(deserializer)?;
        let mut path = super::super::codec::Path::root("GenomicStudy");
        let object =
            super::super::codec::expect_object(&value, &path).map_err(serde::de::Error::custom)?;
        super::super::codec::Json::from_json(object, &mut path).map_err(serde::de::Error::custom)
    }
}

/// Genomic Analysis Event
///
/// The details about a specific analysis that was performed in this
/// GenomicStudy.
#[derive(Debug, Clone, Default, PartialEq, Eq)]
pub struct GenomicStudyAnalysis {
    /// Unique id for inter-element referencing
    ///
    /// Unique id for the element within a resource (for internal references). This
    /// may be any string value that does not contain spaces.
    pub id: Option<std::string::String>,
    /// Additional content defined by implementations
    ///
    /// May be used to represent additional information that is not part of the
    /// basic definition of the element. To make the use of extensions safe and
    /// managable, there is a strict set of governance applied to the definition and
    /// use of extensions. Though any implementer can define an extension, there is
    /// a set of requirements that SHALL be met as part of the definition of the
    /// extension.
    pub extension: Vec<super::extension::Extension>,
    /// Extensions that cannot be ignored even if unrecognized
    ///
    /// May be used to represent additional information that is not part of the
    /// basic definition of the element and that modifies the understanding of the
    /// element in which it is contained and/or the understanding of the containing
    /// element's descendants. Usually modifier elements provide negation or
    /// qualification. To make the use of extensions safe and managable, there is a
    /// strict set of governance applied to the definition and use of extensions.
    /// Though any implementer can define an extension, there is a set of
    /// requirements that SHALL be met as part of the definition of the extension.
    /// Applications processing a resource are required to check for modifier
    /// extensions. Modifier extensions SHALL NOT change the meaning of any elements
    /// on Resource or DomainResource (including cannot change the meaning of
    /// modifierExtension itself).
    pub modifier_extension: Vec<super::extension::Extension>,
    /// Identifiers for the analysis event.
    pub identifier: Vec<super::identifier::Identifier>,
    /// Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI)
    ///
    /// Type of the methods used in the analysis, e.g., Fluorescence in situ
    /// hybridization (FISH), Karyotyping, or Microsatellite instability testing
    /// (MSI).
    pub method_type: Vec<super::codeable_concept::CodeableConcept>,
    /// Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA
    /// change)
    ///
    /// Type of the genomic changes studied in the analysis, e.g., DNA, RNA, or
    /// amino acid change.
    pub change_type: Vec<super::codeable_concept::CodeableConcept>,
    /// Genome build that is used in this analysis
    ///
    /// The reference genome build that is used in this analysis.
    pub genome_build: Option<super::codeable_concept::CodeableConcept>,
    /// The defined protocol that describes the analysis.
    pub instantiates_canonical: Option<super::primitives::Canonical>,
    /// The URL pointing to an externally maintained protocol that describes the
    /// analysis.
    pub instantiates_uri: Option<super::primitives::Uri>,
    /// Name of the analysis event (human friendly).
    pub title: Option<super::primitives::String>,
    /// What the genomic analysis is about, when it is not about the subject of
    /// record
    ///
    /// The focus of a genomic analysis when it is not the patient of record
    /// representing something or someone associated with the patient such as a
    /// spouse, parent, child, or sibling. For example, in trio testing, the
    /// GenomicStudy.subject would be the child (proband) and the
    /// GenomicStudy.analysis.focus of a specific analysis would be the parent.
    pub focus: Vec<super::reference::Reference>,
    /// The specimen used in the analysis event.
    pub specimen: Vec<super::reference::Reference>,
    /// The date of the analysis event.
    pub date: Option<super::primitives::DateTime>,
    /// Any notes capture with the analysis event.
    pub note: Vec<super::annotation::Annotation>,
    /// The protocol that was performed for the analysis event.
    pub protocol_performed: Option<super::reference::Reference>,
    /// The genomic regions to be studied in the analysis (BED file).
    pub regions_studied: Vec<super::reference::Reference>,
    /// Genomic regions actually called in the analysis event (BED file).
    pub regions_called: Vec<super::reference::Reference>,
    /// Inputs for the analysis event.
    pub input: Vec<GenomicStudyAnalysisInput>,
    /// Outputs for the analysis event.
    pub output: Vec<GenomicStudyAnalysisOutput>,
    /// Performer for the analysis event.
    pub performer: Vec<GenomicStudyAnalysisPerformer>,
    /// Devices used for the analysis (e.g., instruments, software), with settings
    /// and parameters.
    pub device: Vec<GenomicStudyAnalysisDevice>,
}

impl super::super::codec::Json for GenomicStudyAnalysis {
    fn to_json(&self) -> Result<super::super::codec::Object, super::super::codec::EncodeError> {
        let mut object = super::super::codec::Object::new();
        if let Some(v) = &self.id {
            object.insert(
                std::string::String::from("id"),
                super::super::codec::Value::String(v.clone()),
            );
        }
        if !self.extension.is_empty() {
            let mut items = Vec::with_capacity(self.extension.len());
            for item in &self.extension {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("extension"),
                super::super::codec::Value::Array(items),
            );
        }
        if !self.modifier_extension.is_empty() {
            let mut items = Vec::with_capacity(self.modifier_extension.len());
            for item in &self.modifier_extension {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("modifierExtension"),
                super::super::codec::Value::Array(items),
            );
        }
        if !self.identifier.is_empty() {
            let mut items = Vec::with_capacity(self.identifier.len());
            for item in &self.identifier {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("identifier"),
                super::super::codec::Value::Array(items),
            );
        }
        if !self.method_type.is_empty() {
            let mut items = Vec::with_capacity(self.method_type.len());
            for item in &self.method_type {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("methodType"),
                super::super::codec::Value::Array(items),
            );
        }
        if !self.change_type.is_empty() {
            let mut items = Vec::with_capacity(self.change_type.len());
            for item in &self.change_type {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("changeType"),
                super::super::codec::Value::Array(items),
            );
        }
        if let Some(item) = &self.genome_build {
            object.insert(
                std::string::String::from("genomeBuild"),
                super::super::codec::Value::Object(super::super::codec::Json::to_json(item)?),
            );
        }
        if let Some(item) = &self.instantiates_canonical {
            if let Some(v) = super::super::codec::Primitive::value_json(item)? {
                object.insert(std::string::String::from("instantiatesCanonical"), v);
            }
            if let Some(e) = super::super::codec::Primitive::element_json(item)? {
                object.insert(std::string::String::from("_instantiatesCanonical"), e);
            }
        }
        if let Some(item) = &self.instantiates_uri {
            if let Some(v) = super::super::codec::Primitive::value_json(item)? {
                object.insert(std::string::String::from("instantiatesUri"), v);
            }
            if let Some(e) = super::super::codec::Primitive::element_json(item)? {
                object.insert(std::string::String::from("_instantiatesUri"), e);
            }
        }
        if let Some(item) = &self.title {
            if let Some(v) = super::super::codec::Primitive::value_json(item)? {
                object.insert(std::string::String::from("title"), v);
            }
            if let Some(e) = super::super::codec::Primitive::element_json(item)? {
                object.insert(std::string::String::from("_title"), e);
            }
        }
        if !self.focus.is_empty() {
            let mut items = Vec::with_capacity(self.focus.len());
            for item in &self.focus {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("focus"),
                super::super::codec::Value::Array(items),
            );
        }
        if !self.specimen.is_empty() {
            let mut items = Vec::with_capacity(self.specimen.len());
            for item in &self.specimen {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("specimen"),
                super::super::codec::Value::Array(items),
            );
        }
        if let Some(item) = &self.date {
            if let Some(v) = super::super::codec::Primitive::value_json(item)? {
                object.insert(std::string::String::from("date"), v);
            }
            if let Some(e) = super::super::codec::Primitive::element_json(item)? {
                object.insert(std::string::String::from("_date"), e);
            }
        }
        if !self.note.is_empty() {
            let mut items = Vec::with_capacity(self.note.len());
            for item in &self.note {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("note"),
                super::super::codec::Value::Array(items),
            );
        }
        if let Some(item) = &self.protocol_performed {
            object.insert(
                std::string::String::from("protocolPerformed"),
                super::super::codec::Value::Object(super::super::codec::Json::to_json(item)?),
            );
        }
        if !self.regions_studied.is_empty() {
            let mut items = Vec::with_capacity(self.regions_studied.len());
            for item in &self.regions_studied {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("regionsStudied"),
                super::super::codec::Value::Array(items),
            );
        }
        if !self.regions_called.is_empty() {
            let mut items = Vec::with_capacity(self.regions_called.len());
            for item in &self.regions_called {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("regionsCalled"),
                super::super::codec::Value::Array(items),
            );
        }
        if !self.input.is_empty() {
            let mut items = Vec::with_capacity(self.input.len());
            for item in &self.input {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("input"),
                super::super::codec::Value::Array(items),
            );
        }
        if !self.output.is_empty() {
            let mut items = Vec::with_capacity(self.output.len());
            for item in &self.output {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("output"),
                super::super::codec::Value::Array(items),
            );
        }
        if !self.performer.is_empty() {
            let mut items = Vec::with_capacity(self.performer.len());
            for item in &self.performer {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("performer"),
                super::super::codec::Value::Array(items),
            );
        }
        if !self.device.is_empty() {
            let mut items = Vec::with_capacity(self.device.len());
            for item in &self.device {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("device"),
                super::super::codec::Value::Array(items),
            );
        }
        Ok(object)
    }

    fn from_json(
        object: &super::super::codec::Object,
        path: &mut super::super::codec::Path,
    ) -> Result<Self, super::super::codec::DecodeError> {
        let mut raw_id: Option<&super::super::codec::Value> = None;
        let mut raw_extension: Option<&super::super::codec::Value> = None;
        let mut raw_modifier_extension: Option<&super::super::codec::Value> = None;
        let mut raw_identifier: Option<&super::super::codec::Value> = None;
        let mut raw_method_type: Option<&super::super::codec::Value> = None;
        let mut raw_change_type: Option<&super::super::codec::Value> = None;
        let mut raw_genome_build: Option<&super::super::codec::Value> = None;
        let mut raw_instantiates_canonical: Option<&super::super::codec::Value> = None;
        let mut raw_instantiates_canonical_element: Option<&super::super::codec::Value> = None;
        let mut raw_instantiates_uri: Option<&super::super::codec::Value> = None;
        let mut raw_instantiates_uri_element: Option<&super::super::codec::Value> = None;
        let mut raw_title: Option<&super::super::codec::Value> = None;
        let mut raw_title_element: Option<&super::super::codec::Value> = None;
        let mut raw_focus: Option<&super::super::codec::Value> = None;
        let mut raw_specimen: Option<&super::super::codec::Value> = None;
        let mut raw_date: Option<&super::super::codec::Value> = None;
        let mut raw_date_element: Option<&super::super::codec::Value> = None;
        let mut raw_note: Option<&super::super::codec::Value> = None;
        let mut raw_protocol_performed: Option<&super::super::codec::Value> = None;
        let mut raw_regions_studied: Option<&super::super::codec::Value> = None;
        let mut raw_regions_called: Option<&super::super::codec::Value> = None;
        let mut raw_input: Option<&super::super::codec::Value> = None;
        let mut raw_output: Option<&super::super::codec::Value> = None;
        let mut raw_performer: Option<&super::super::codec::Value> = None;
        let mut raw_device: Option<&super::super::codec::Value> = None;
        for (key, value) in object {
            match key.as_str() {
                "id" => {
                    raw_id = Some(value);
                }
                "extension" => {
                    raw_extension = Some(value);
                }
                "modifierExtension" => {
                    raw_modifier_extension = Some(value);
                }
                "identifier" => {
                    raw_identifier = Some(value);
                }
                "methodType" => {
                    raw_method_type = Some(value);
                }
                "changeType" => {
                    raw_change_type = Some(value);
                }
                "genomeBuild" => {
                    raw_genome_build = Some(value);
                }
                "instantiatesCanonical" => {
                    raw_instantiates_canonical = Some(value);
                }
                "_instantiatesCanonical" => {
                    raw_instantiates_canonical_element = Some(value);
                }
                "instantiatesUri" => {
                    raw_instantiates_uri = Some(value);
                }
                "_instantiatesUri" => {
                    raw_instantiates_uri_element = Some(value);
                }
                "title" => {
                    raw_title = Some(value);
                }
                "_title" => {
                    raw_title_element = Some(value);
                }
                "focus" => {
                    raw_focus = Some(value);
                }
                "specimen" => {
                    raw_specimen = Some(value);
                }
                "date" => {
                    raw_date = Some(value);
                }
                "_date" => {
                    raw_date_element = Some(value);
                }
                "note" => {
                    raw_note = Some(value);
                }
                "protocolPerformed" => {
                    raw_protocol_performed = Some(value);
                }
                "regionsStudied" => {
                    raw_regions_studied = Some(value);
                }
                "regionsCalled" => {
                    raw_regions_called = Some(value);
                }
                "input" => {
                    raw_input = Some(value);
                }
                "output" => {
                    raw_output = Some(value);
                }
                "performer" => {
                    raw_performer = Some(value);
                }
                "device" => {
                    raw_device = Some(value);
                }
                other => {
                    return path.with(other, |path| {
                        Err(path.error(super::super::codec::DecodeErrorKind::UnknownProperty))
                    });
                }
            }
        }
        let field_id = raw_id
            .map(|value| {
                path.with("id", |path| {
                    let value = super::super::codec::expect_single(value, path)?;
                    super::primitives::checked_string(
                        super::super::codec::expect_string(value, path)?,
                        path,
                    )
                })
            })
            .transpose()?;
        let mut field_extension = Vec::new();
        if let Some(raw) = raw_extension {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_extension.push(path.with_index("extension", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let mut field_modifier_extension = Vec::new();
        if let Some(raw) = raw_modifier_extension {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_modifier_extension.push(path.with_index(
                    "modifierExtension",
                    index,
                    |path| {
                        super::super::codec::Json::from_json(
                            super::super::codec::expect_object(value, path)?,
                            path,
                        )
                    },
                )?);
            }
        }
        let mut field_identifier = Vec::new();
        if let Some(raw) = raw_identifier {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_identifier.push(path.with_index("identifier", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let mut field_method_type = Vec::new();
        if let Some(raw) = raw_method_type {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_method_type.push(path.with_index("methodType", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let mut field_change_type = Vec::new();
        if let Some(raw) = raw_change_type {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_change_type.push(path.with_index("changeType", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let field_genome_build = raw_genome_build
            .map(|value| {
                path.with("genomeBuild", |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(
                            super::super::codec::expect_single(value, path)?,
                            path,
                        )?,
                        path,
                    )
                })
            })
            .transpose()?;
        let field_instantiates_canonical = match (
            raw_instantiates_canonical,
            raw_instantiates_canonical_element,
        ) {
            (None, None) => None,
            (value, element) => Some(path.with("instantiatesCanonical", |path| {
                super::super::codec::Primitive::from_json_parts(value, element, path)
            })?),
        };
        let field_instantiates_uri = match (raw_instantiates_uri, raw_instantiates_uri_element) {
            (None, None) => None,
            (value, element) => Some(path.with("instantiatesUri", |path| {
                super::super::codec::Primitive::from_json_parts(value, element, path)
            })?),
        };
        let field_title = match (raw_title, raw_title_element) {
            (None, None) => None,
            (value, element) => Some(path.with("title", |path| {
                super::super::codec::Primitive::from_json_parts(value, element, path)
            })?),
        };
        let mut field_focus = Vec::new();
        if let Some(raw) = raw_focus {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_focus.push(path.with_index("focus", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let mut field_specimen = Vec::new();
        if let Some(raw) = raw_specimen {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_specimen.push(path.with_index("specimen", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let field_date = match (raw_date, raw_date_element) {
            (None, None) => None,
            (value, element) => Some(path.with("date", |path| {
                super::super::codec::Primitive::from_json_parts(value, element, path)
            })?),
        };
        let mut field_note = Vec::new();
        if let Some(raw) = raw_note {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_note.push(path.with_index("note", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let field_protocol_performed = raw_protocol_performed
            .map(|value| {
                path.with("protocolPerformed", |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(
                            super::super::codec::expect_single(value, path)?,
                            path,
                        )?,
                        path,
                    )
                })
            })
            .transpose()?;
        let mut field_regions_studied = Vec::new();
        if let Some(raw) = raw_regions_studied {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_regions_studied.push(path.with_index("regionsStudied", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let mut field_regions_called = Vec::new();
        if let Some(raw) = raw_regions_called {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_regions_called.push(path.with_index("regionsCalled", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let mut field_input = Vec::new();
        if let Some(raw) = raw_input {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_input.push(path.with_index("input", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let mut field_output = Vec::new();
        if let Some(raw) = raw_output {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_output.push(path.with_index("output", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let mut field_performer = Vec::new();
        if let Some(raw) = raw_performer {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_performer.push(path.with_index("performer", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let mut field_device = Vec::new();
        if let Some(raw) = raw_device {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_device.push(path.with_index("device", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        Ok(Self {
            id: field_id,
            extension: field_extension,
            modifier_extension: field_modifier_extension,
            identifier: field_identifier,
            method_type: field_method_type,
            change_type: field_change_type,
            genome_build: field_genome_build,
            instantiates_canonical: field_instantiates_canonical,
            instantiates_uri: field_instantiates_uri,
            title: field_title,
            focus: field_focus,
            specimen: field_specimen,
            date: field_date,
            note: field_note,
            protocol_performed: field_protocol_performed,
            regions_studied: field_regions_studied,
            regions_called: field_regions_called,
            input: field_input,
            output: field_output,
            performer: field_performer,
            device: field_device,
        })
    }
}

impl serde::Serialize for GenomicStudyAnalysis {
    fn serialize<S: serde::Serializer>(&self, serializer: S) -> Result<S::Ok, S::Error> {
        let mut map = serde::Serializer::serialize_map(serializer, None)?;
        if let Some(item) = &self.date {
            super::super::codec::element_entry(&mut map, "_date", item)?;
        }
        if let Some(item) = &self.instantiates_canonical {
            super::super::codec::element_entry(&mut map, "_instantiatesCanonical", item)?;
        }
        if let Some(item) = &self.instantiates_uri {
            super::super::codec::element_entry(&mut map, "_instantiatesUri", item)?;
        }
        if let Some(item) = &self.title {
            super::super::codec::element_entry(&mut map, "_title", item)?;
        }
        if !self.change_type.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "changeType", &self.change_type)?;
        }
        if let Some(item) = &self.date {
            super::super::codec::value_entry(&mut map, "date", item)?;
        }
        if !self.device.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "device", &self.device)?;
        }
        if !self.extension.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "extension", &self.extension)?;
        }
        if !self.focus.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "focus", &self.focus)?;
        }
        if let Some(item) = &self.genome_build {
            serde::ser::SerializeMap::serialize_entry(&mut map, "genomeBuild", item)?;
        }
        if let Some(v) = &self.id {
            serde::ser::SerializeMap::serialize_entry(&mut map, "id", v)?;
        }
        if !self.identifier.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "identifier", &self.identifier)?;
        }
        if !self.input.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "input", &self.input)?;
        }
        if let Some(item) = &self.instantiates_canonical {
            super::super::codec::value_entry(&mut map, "instantiatesCanonical", item)?;
        }
        if let Some(item) = &self.instantiates_uri {
            super::super::codec::value_entry(&mut map, "instantiatesUri", item)?;
        }
        if !self.method_type.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "methodType", &self.method_type)?;
        }
        if !self.modifier_extension.is_empty() {
            serde::ser::SerializeMap::serialize_entry(
                &mut map,
                "modifierExtension",
                &self.modifier_extension,
            )?;
        }
        if !self.note.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "note", &self.note)?;
        }
        if !self.output.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "output", &self.output)?;
        }
        if !self.performer.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "performer", &self.performer)?;
        }
        if let Some(item) = &self.protocol_performed {
            serde::ser::SerializeMap::serialize_entry(&mut map, "protocolPerformed", item)?;
        }
        if !self.regions_called.is_empty() {
            serde::ser::SerializeMap::serialize_entry(
                &mut map,
                "regionsCalled",
                &self.regions_called,
            )?;
        }
        if !self.regions_studied.is_empty() {
            serde::ser::SerializeMap::serialize_entry(
                &mut map,
                "regionsStudied",
                &self.regions_studied,
            )?;
        }
        if !self.specimen.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "specimen", &self.specimen)?;
        }
        if let Some(item) = &self.title {
            super::super::codec::value_entry(&mut map, "title", item)?;
        }
        serde::ser::SerializeMap::end(map)
    }
}

impl<'de> serde::Deserialize<'de> for GenomicStudyAnalysis {
    fn deserialize<D: serde::Deserializer<'de>>(deserializer: D) -> Result<Self, D::Error> {
        let value = <super::super::codec::Value as serde::Deserialize>::deserialize(deserializer)?;
        let mut path = super::super::codec::Path::root("GenomicStudyAnalysis");
        let object =
            super::super::codec::expect_object(&value, &path).map_err(serde::de::Error::custom)?;
        super::super::codec::Json::from_json(object, &mut path).map_err(serde::de::Error::custom)
    }
}

/// Devices used for the analysis (e.g., instruments, software), with settings
/// and parameters.
#[derive(Debug, Clone, Default, PartialEq, Eq)]
pub struct GenomicStudyAnalysisDevice {
    /// Unique id for inter-element referencing
    ///
    /// Unique id for the element within a resource (for internal references). This
    /// may be any string value that does not contain spaces.
    pub id: Option<std::string::String>,
    /// Additional content defined by implementations
    ///
    /// May be used to represent additional information that is not part of the
    /// basic definition of the element. To make the use of extensions safe and
    /// managable, there is a strict set of governance applied to the definition and
    /// use of extensions. Though any implementer can define an extension, there is
    /// a set of requirements that SHALL be met as part of the definition of the
    /// extension.
    pub extension: Vec<super::extension::Extension>,
    /// Extensions that cannot be ignored even if unrecognized
    ///
    /// May be used to represent additional information that is not part of the
    /// basic definition of the element and that modifies the understanding of the
    /// element in which it is contained and/or the understanding of the containing
    /// element's descendants. Usually modifier elements provide negation or
    /// qualification. To make the use of extensions safe and managable, there is a
    /// strict set of governance applied to the definition and use of extensions.
    /// Though any implementer can define an extension, there is a set of
    /// requirements that SHALL be met as part of the definition of the extension.
    /// Applications processing a resource are required to check for modifier
    /// extensions. Modifier extensions SHALL NOT change the meaning of any elements
    /// on Resource or DomainResource (including cannot change the meaning of
    /// modifierExtension itself).
    pub modifier_extension: Vec<super::extension::Extension>,
    /// Device used for the analysis.
    pub device: Option<super::reference::Reference>,
    /// Specific function for the device used for the analysis.
    pub function: Option<super::codeable_concept::CodeableConcept>,
}

impl super::super::codec::Json for GenomicStudyAnalysisDevice {
    fn to_json(&self) -> Result<super::super::codec::Object, super::super::codec::EncodeError> {
        let mut object = super::super::codec::Object::new();
        if let Some(v) = &self.id {
            object.insert(
                std::string::String::from("id"),
                super::super::codec::Value::String(v.clone()),
            );
        }
        if !self.extension.is_empty() {
            let mut items = Vec::with_capacity(self.extension.len());
            for item in &self.extension {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("extension"),
                super::super::codec::Value::Array(items),
            );
        }
        if !self.modifier_extension.is_empty() {
            let mut items = Vec::with_capacity(self.modifier_extension.len());
            for item in &self.modifier_extension {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("modifierExtension"),
                super::super::codec::Value::Array(items),
            );
        }
        if let Some(item) = &self.device {
            object.insert(
                std::string::String::from("device"),
                super::super::codec::Value::Object(super::super::codec::Json::to_json(item)?),
            );
        }
        if let Some(item) = &self.function {
            object.insert(
                std::string::String::from("function"),
                super::super::codec::Value::Object(super::super::codec::Json::to_json(item)?),
            );
        }
        Ok(object)
    }

    fn from_json(
        object: &super::super::codec::Object,
        path: &mut super::super::codec::Path,
    ) -> Result<Self, super::super::codec::DecodeError> {
        let mut raw_id: Option<&super::super::codec::Value> = None;
        let mut raw_extension: Option<&super::super::codec::Value> = None;
        let mut raw_modifier_extension: Option<&super::super::codec::Value> = None;
        let mut raw_device: Option<&super::super::codec::Value> = None;
        let mut raw_function: Option<&super::super::codec::Value> = None;
        for (key, value) in object {
            match key.as_str() {
                "id" => {
                    raw_id = Some(value);
                }
                "extension" => {
                    raw_extension = Some(value);
                }
                "modifierExtension" => {
                    raw_modifier_extension = Some(value);
                }
                "device" => {
                    raw_device = Some(value);
                }
                "function" => {
                    raw_function = Some(value);
                }
                other => {
                    return path.with(other, |path| {
                        Err(path.error(super::super::codec::DecodeErrorKind::UnknownProperty))
                    });
                }
            }
        }
        let field_id = raw_id
            .map(|value| {
                path.with("id", |path| {
                    let value = super::super::codec::expect_single(value, path)?;
                    super::primitives::checked_string(
                        super::super::codec::expect_string(value, path)?,
                        path,
                    )
                })
            })
            .transpose()?;
        let mut field_extension = Vec::new();
        if let Some(raw) = raw_extension {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_extension.push(path.with_index("extension", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let mut field_modifier_extension = Vec::new();
        if let Some(raw) = raw_modifier_extension {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_modifier_extension.push(path.with_index(
                    "modifierExtension",
                    index,
                    |path| {
                        super::super::codec::Json::from_json(
                            super::super::codec::expect_object(value, path)?,
                            path,
                        )
                    },
                )?);
            }
        }
        let field_device = raw_device
            .map(|value| {
                path.with("device", |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(
                            super::super::codec::expect_single(value, path)?,
                            path,
                        )?,
                        path,
                    )
                })
            })
            .transpose()?;
        let field_function = raw_function
            .map(|value| {
                path.with("function", |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(
                            super::super::codec::expect_single(value, path)?,
                            path,
                        )?,
                        path,
                    )
                })
            })
            .transpose()?;
        Ok(Self {
            id: field_id,
            extension: field_extension,
            modifier_extension: field_modifier_extension,
            device: field_device,
            function: field_function,
        })
    }
}

impl serde::Serialize for GenomicStudyAnalysisDevice {
    fn serialize<S: serde::Serializer>(&self, serializer: S) -> Result<S::Ok, S::Error> {
        let mut map = serde::Serializer::serialize_map(serializer, None)?;
        if let Some(item) = &self.device {
            serde::ser::SerializeMap::serialize_entry(&mut map, "device", item)?;
        }
        if !self.extension.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "extension", &self.extension)?;
        }
        if let Some(item) = &self.function {
            serde::ser::SerializeMap::serialize_entry(&mut map, "function", item)?;
        }
        if let Some(v) = &self.id {
            serde::ser::SerializeMap::serialize_entry(&mut map, "id", v)?;
        }
        if !self.modifier_extension.is_empty() {
            serde::ser::SerializeMap::serialize_entry(
                &mut map,
                "modifierExtension",
                &self.modifier_extension,
            )?;
        }
        serde::ser::SerializeMap::end(map)
    }
}

impl<'de> serde::Deserialize<'de> for GenomicStudyAnalysisDevice {
    fn deserialize<D: serde::Deserializer<'de>>(deserializer: D) -> Result<Self, D::Error> {
        let value = <super::super::codec::Value as serde::Deserialize>::deserialize(deserializer)?;
        let mut path = super::super::codec::Path::root("GenomicStudyAnalysisDevice");
        let object =
            super::super::codec::expect_object(&value, &path).map_err(serde::de::Error::custom)?;
        super::super::codec::Json::from_json(object, &mut path).map_err(serde::de::Error::custom)
    }
}

/// Inputs for the analysis event.
#[derive(Debug, Clone, Default, PartialEq, Eq)]
pub struct GenomicStudyAnalysisInput {
    /// Unique id for inter-element referencing
    ///
    /// Unique id for the element within a resource (for internal references). This
    /// may be any string value that does not contain spaces.
    pub id: Option<std::string::String>,
    /// Additional content defined by implementations
    ///
    /// May be used to represent additional information that is not part of the
    /// basic definition of the element. To make the use of extensions safe and
    /// managable, there is a strict set of governance applied to the definition and
    /// use of extensions. Though any implementer can define an extension, there is
    /// a set of requirements that SHALL be met as part of the definition of the
    /// extension.
    pub extension: Vec<super::extension::Extension>,
    /// Extensions that cannot be ignored even if unrecognized
    ///
    /// May be used to represent additional information that is not part of the
    /// basic definition of the element and that modifies the understanding of the
    /// element in which it is contained and/or the understanding of the containing
    /// element's descendants. Usually modifier elements provide negation or
    /// qualification. To make the use of extensions safe and managable, there is a
    /// strict set of governance applied to the definition and use of extensions.
    /// Though any implementer can define an extension, there is a set of
    /// requirements that SHALL be met as part of the definition of the extension.
    /// Applications processing a resource are required to check for modifier
    /// extensions. Modifier extensions SHALL NOT change the meaning of any elements
    /// on Resource or DomainResource (including cannot change the meaning of
    /// modifierExtension itself).
    pub modifier_extension: Vec<super::extension::Extension>,
    /// File containing input data.
    pub file: Option<super::reference::Reference>,
    /// Type of input data (e.g., BAM, CRAM, or FASTA)
    ///
    /// Type of input data, e.g., BAM, CRAM, or FASTA.
    pub r#type: Option<super::codeable_concept::CodeableConcept>,
    /// The analysis event or other GenomicStudy that generated this input file.
    pub generated_by: Option<GenomicStudyAnalysisInputGeneratedBy>,
}

impl super::super::codec::Json for GenomicStudyAnalysisInput {
    fn to_json(&self) -> Result<super::super::codec::Object, super::super::codec::EncodeError> {
        let mut object = super::super::codec::Object::new();
        if let Some(v) = &self.id {
            object.insert(
                std::string::String::from("id"),
                super::super::codec::Value::String(v.clone()),
            );
        }
        if !self.extension.is_empty() {
            let mut items = Vec::with_capacity(self.extension.len());
            for item in &self.extension {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("extension"),
                super::super::codec::Value::Array(items),
            );
        }
        if !self.modifier_extension.is_empty() {
            let mut items = Vec::with_capacity(self.modifier_extension.len());
            for item in &self.modifier_extension {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("modifierExtension"),
                super::super::codec::Value::Array(items),
            );
        }
        if let Some(item) = &self.file {
            object.insert(
                std::string::String::from("file"),
                super::super::codec::Value::Object(super::super::codec::Json::to_json(item)?),
            );
        }
        if let Some(item) = &self.r#type {
            object.insert(
                std::string::String::from("type"),
                super::super::codec::Value::Object(super::super::codec::Json::to_json(item)?),
            );
        }
        if let Some(item) = &self.generated_by {
            let (suffix, value, element) = item.to_json_parts()?;
            if let Some(value) = value {
                object.insert(format!("generatedBy{suffix}"), value);
            }
            if let Some(element) = element {
                object.insert(format!("_generatedBy{suffix}"), element);
            }
        }
        Ok(object)
    }

    fn from_json(
        object: &super::super::codec::Object,
        path: &mut super::super::codec::Path,
    ) -> Result<Self, super::super::codec::DecodeError> {
        let mut raw_id: Option<&super::super::codec::Value> = None;
        let mut raw_extension: Option<&super::super::codec::Value> = None;
        let mut raw_modifier_extension: Option<&super::super::codec::Value> = None;
        let mut raw_file: Option<&super::super::codec::Value> = None;
        let mut raw_type: Option<&super::super::codec::Value> = None;
        let mut raw_generated_by = super::super::codec::ChoiceSlot::default();
        for (key, value) in object {
            match key.as_str() {
                "id" => {
                    raw_id = Some(value);
                }
                "extension" => {
                    raw_extension = Some(value);
                }
                "modifierExtension" => {
                    raw_modifier_extension = Some(value);
                }
                "file" => {
                    raw_file = Some(value);
                }
                "type" => {
                    raw_type = Some(value);
                }
                "generatedByIdentifier" => {
                    raw_generated_by.value("Identifier", value, path)?;
                }
                "_generatedByIdentifier" => {
                    raw_generated_by.element("Identifier", value, path)?;
                }
                "generatedByReference" => {
                    raw_generated_by.value("Reference", value, path)?;
                }
                "_generatedByReference" => {
                    raw_generated_by.element("Reference", value, path)?;
                }
                other => {
                    return path.with(other, |path| {
                        Err(path.error(super::super::codec::DecodeErrorKind::UnknownProperty))
                    });
                }
            }
        }
        let field_id = raw_id
            .map(|value| {
                path.with("id", |path| {
                    let value = super::super::codec::expect_single(value, path)?;
                    super::primitives::checked_string(
                        super::super::codec::expect_string(value, path)?,
                        path,
                    )
                })
            })
            .transpose()?;
        let mut field_extension = Vec::new();
        if let Some(raw) = raw_extension {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_extension.push(path.with_index("extension", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let mut field_modifier_extension = Vec::new();
        if let Some(raw) = raw_modifier_extension {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_modifier_extension.push(path.with_index(
                    "modifierExtension",
                    index,
                    |path| {
                        super::super::codec::Json::from_json(
                            super::super::codec::expect_object(value, path)?,
                            path,
                        )
                    },
                )?);
            }
        }
        let field_file = raw_file
            .map(|value| {
                path.with("file", |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(
                            super::super::codec::expect_single(value, path)?,
                            path,
                        )?,
                        path,
                    )
                })
            })
            .transpose()?;
        let field_type = raw_type
            .map(|value| {
                path.with("type", |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(
                            super::super::codec::expect_single(value, path)?,
                            path,
                        )?,
                        path,
                    )
                })
            })
            .transpose()?;
        let field_generated_by = match raw_generated_by.suffix {
            None => None,
            Some(suffix) => Some(path.with("generatedBy", |path| {
                GenomicStudyAnalysisInputGeneratedBy::from_json_parts(
                    suffix,
                    raw_generated_by.value,
                    raw_generated_by.element,
                    path,
                )
            })?),
        };
        Ok(Self {
            id: field_id,
            extension: field_extension,
            modifier_extension: field_modifier_extension,
            file: field_file,
            r#type: field_type,
            generated_by: field_generated_by,
        })
    }
}

impl serde::Serialize for GenomicStudyAnalysisInput {
    fn serialize<S: serde::Serializer>(&self, serializer: S) -> Result<S::Ok, S::Error> {
        let mut map = serde::Serializer::serialize_map(serializer, None)?;
        if !self.extension.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "extension", &self.extension)?;
        }
        if let Some(item) = &self.file {
            serde::ser::SerializeMap::serialize_entry(&mut map, "file", item)?;
        }
        match &self.generated_by {
            Some(GenomicStudyAnalysisInputGeneratedBy::Identifier(inner)) => {
                serde::ser::SerializeMap::serialize_entry(
                    &mut map,
                    "generatedByIdentifier",
                    inner.as_ref(),
                )?;
            }
            Some(GenomicStudyAnalysisInputGeneratedBy::Reference(inner)) => {
                serde::ser::SerializeMap::serialize_entry(
                    &mut map,
                    "generatedByReference",
                    inner.as_ref(),
                )?;
            }
            None => {}
        }
        if let Some(v) = &self.id {
            serde::ser::SerializeMap::serialize_entry(&mut map, "id", v)?;
        }
        if !self.modifier_extension.is_empty() {
            serde::ser::SerializeMap::serialize_entry(
                &mut map,
                "modifierExtension",
                &self.modifier_extension,
            )?;
        }
        if let Some(item) = &self.r#type {
            serde::ser::SerializeMap::serialize_entry(&mut map, "type", item)?;
        }
        serde::ser::SerializeMap::end(map)
    }
}

impl<'de> serde::Deserialize<'de> for GenomicStudyAnalysisInput {
    fn deserialize<D: serde::Deserializer<'de>>(deserializer: D) -> Result<Self, D::Error> {
        let value = <super::super::codec::Value as serde::Deserialize>::deserialize(deserializer)?;
        let mut path = super::super::codec::Path::root("GenomicStudyAnalysisInput");
        let object =
            super::super::codec::expect_object(&value, &path).map_err(serde::de::Error::custom)?;
        super::super::codec::Json::from_json(object, &mut path).map_err(serde::de::Error::custom)
    }
}

/// The \`generatedBy\[x\]\` choice of \`GenomicStudyAnalysisInput\`.
///
/// The analysis event or other GenomicStudy that generated this input file.
#[derive(Debug, Clone, PartialEq, Eq)]
pub enum GenomicStudyAnalysisInputGeneratedBy {
    /// The `Identifier` form.
    Identifier(Box<super::identifier::Identifier>),
    /// The `Reference` form.
    Reference(Box<super::reference::Reference>),
}

impl GenomicStudyAnalysisInputGeneratedBy {
    /// The key suffix, the value part, and the `_name` part of this form.
    ///
    /// # Errors
    ///
    /// Returns [`super::super::codec::EncodeError`] when a held value has no JSON form.
    pub fn to_json_parts(
        &self,
    ) -> Result<
        (
            &'static str,
            Option<super::super::codec::Value>,
            Option<super::super::codec::Value>,
        ),
        super::super::codec::EncodeError,
    > {
        match self {
            Self::Identifier(inner) => Ok((
                "Identifier",
                Some(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(inner.as_ref())?,
                )),
                None,
            )),
            Self::Reference(inner) => Ok((
                "Reference",
                Some(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(inner.as_ref())?,
                )),
                None,
            )),
        }
    }

    /// Decodes the form named by `suffix` from its value and `_name` parts.
    ///
    /// # Errors
    ///
    /// Returns [`super::super::codec::DecodeError`] for an unknown suffix or a malformed part.
    pub fn from_json_parts(
        suffix: &str,
        value: Option<&super::super::codec::Value>,
        element: Option<&super::super::codec::Value>,
        path: &mut super::super::codec::Path,
    ) -> Result<Self, super::super::codec::DecodeError> {
        match suffix {
            "Identifier" => {
                if element.is_some() {
                    return Err(path.error(super::super::codec::DecodeErrorKind::WrongType {
                        expected: "no underscore form for a complex type",
                    }));
                }
                let value = value.ok_or_else(|| {
                    path.error(super::super::codec::DecodeErrorKind::MissingProperty)
                })?;
                let inner = super::super::codec::Json::from_json(
                    super::super::codec::expect_object(
                        super::super::codec::expect_single(value, path)?,
                        path,
                    )?,
                    path,
                )?;
                Ok(Self::Identifier(Box::new(inner)))
            }
            "Reference" => {
                if element.is_some() {
                    return Err(path.error(super::super::codec::DecodeErrorKind::WrongType {
                        expected: "no underscore form for a complex type",
                    }));
                }
                let value = value.ok_or_else(|| {
                    path.error(super::super::codec::DecodeErrorKind::MissingProperty)
                })?;
                let inner = super::super::codec::Json::from_json(
                    super::super::codec::expect_object(
                        super::super::codec::expect_single(value, path)?,
                        path,
                    )?,
                    path,
                )?;
                Ok(Self::Reference(Box::new(inner)))
            }
            _ => Err(path.error(super::super::codec::DecodeErrorKind::UnknownProperty)),
        }
    }
}

/// Outputs for the analysis event.
#[derive(Debug, Clone, Default, PartialEq, Eq)]
pub struct GenomicStudyAnalysisOutput {
    /// Unique id for inter-element referencing
    ///
    /// Unique id for the element within a resource (for internal references). This
    /// may be any string value that does not contain spaces.
    pub id: Option<std::string::String>,
    /// Additional content defined by implementations
    ///
    /// May be used to represent additional information that is not part of the
    /// basic definition of the element. To make the use of extensions safe and
    /// managable, there is a strict set of governance applied to the definition and
    /// use of extensions. Though any implementer can define an extension, there is
    /// a set of requirements that SHALL be met as part of the definition of the
    /// extension.
    pub extension: Vec<super::extension::Extension>,
    /// Extensions that cannot be ignored even if unrecognized
    ///
    /// May be used to represent additional information that is not part of the
    /// basic definition of the element and that modifies the understanding of the
    /// element in which it is contained and/or the understanding of the containing
    /// element's descendants. Usually modifier elements provide negation or
    /// qualification. To make the use of extensions safe and managable, there is a
    /// strict set of governance applied to the definition and use of extensions.
    /// Though any implementer can define an extension, there is a set of
    /// requirements that SHALL be met as part of the definition of the extension.
    /// Applications processing a resource are required to check for modifier
    /// extensions. Modifier extensions SHALL NOT change the meaning of any elements
    /// on Resource or DomainResource (including cannot change the meaning of
    /// modifierExtension itself).
    pub modifier_extension: Vec<super::extension::Extension>,
    /// File containing output data.
    pub file: Option<super::reference::Reference>,
    /// Type of output data (e.g., VCF, MAF, or BAM)
    ///
    /// Type of output data, e.g., VCF, MAF, or BAM.
    pub r#type: Option<super::codeable_concept::CodeableConcept>,
}

impl super::super::codec::Json for GenomicStudyAnalysisOutput {
    fn to_json(&self) -> Result<super::super::codec::Object, super::super::codec::EncodeError> {
        let mut object = super::super::codec::Object::new();
        if let Some(v) = &self.id {
            object.insert(
                std::string::String::from("id"),
                super::super::codec::Value::String(v.clone()),
            );
        }
        if !self.extension.is_empty() {
            let mut items = Vec::with_capacity(self.extension.len());
            for item in &self.extension {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("extension"),
                super::super::codec::Value::Array(items),
            );
        }
        if !self.modifier_extension.is_empty() {
            let mut items = Vec::with_capacity(self.modifier_extension.len());
            for item in &self.modifier_extension {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("modifierExtension"),
                super::super::codec::Value::Array(items),
            );
        }
        if let Some(item) = &self.file {
            object.insert(
                std::string::String::from("file"),
                super::super::codec::Value::Object(super::super::codec::Json::to_json(item)?),
            );
        }
        if let Some(item) = &self.r#type {
            object.insert(
                std::string::String::from("type"),
                super::super::codec::Value::Object(super::super::codec::Json::to_json(item)?),
            );
        }
        Ok(object)
    }

    fn from_json(
        object: &super::super::codec::Object,
        path: &mut super::super::codec::Path,
    ) -> Result<Self, super::super::codec::DecodeError> {
        let mut raw_id: Option<&super::super::codec::Value> = None;
        let mut raw_extension: Option<&super::super::codec::Value> = None;
        let mut raw_modifier_extension: Option<&super::super::codec::Value> = None;
        let mut raw_file: Option<&super::super::codec::Value> = None;
        let mut raw_type: Option<&super::super::codec::Value> = None;
        for (key, value) in object {
            match key.as_str() {
                "id" => {
                    raw_id = Some(value);
                }
                "extension" => {
                    raw_extension = Some(value);
                }
                "modifierExtension" => {
                    raw_modifier_extension = Some(value);
                }
                "file" => {
                    raw_file = Some(value);
                }
                "type" => {
                    raw_type = Some(value);
                }
                other => {
                    return path.with(other, |path| {
                        Err(path.error(super::super::codec::DecodeErrorKind::UnknownProperty))
                    });
                }
            }
        }
        let field_id = raw_id
            .map(|value| {
                path.with("id", |path| {
                    let value = super::super::codec::expect_single(value, path)?;
                    super::primitives::checked_string(
                        super::super::codec::expect_string(value, path)?,
                        path,
                    )
                })
            })
            .transpose()?;
        let mut field_extension = Vec::new();
        if let Some(raw) = raw_extension {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_extension.push(path.with_index("extension", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let mut field_modifier_extension = Vec::new();
        if let Some(raw) = raw_modifier_extension {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_modifier_extension.push(path.with_index(
                    "modifierExtension",
                    index,
                    |path| {
                        super::super::codec::Json::from_json(
                            super::super::codec::expect_object(value, path)?,
                            path,
                        )
                    },
                )?);
            }
        }
        let field_file = raw_file
            .map(|value| {
                path.with("file", |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(
                            super::super::codec::expect_single(value, path)?,
                            path,
                        )?,
                        path,
                    )
                })
            })
            .transpose()?;
        let field_type = raw_type
            .map(|value| {
                path.with("type", |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(
                            super::super::codec::expect_single(value, path)?,
                            path,
                        )?,
                        path,
                    )
                })
            })
            .transpose()?;
        Ok(Self {
            id: field_id,
            extension: field_extension,
            modifier_extension: field_modifier_extension,
            file: field_file,
            r#type: field_type,
        })
    }
}

impl serde::Serialize for GenomicStudyAnalysisOutput {
    fn serialize<S: serde::Serializer>(&self, serializer: S) -> Result<S::Ok, S::Error> {
        let mut map = serde::Serializer::serialize_map(serializer, None)?;
        if !self.extension.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "extension", &self.extension)?;
        }
        if let Some(item) = &self.file {
            serde::ser::SerializeMap::serialize_entry(&mut map, "file", item)?;
        }
        if let Some(v) = &self.id {
            serde::ser::SerializeMap::serialize_entry(&mut map, "id", v)?;
        }
        if !self.modifier_extension.is_empty() {
            serde::ser::SerializeMap::serialize_entry(
                &mut map,
                "modifierExtension",
                &self.modifier_extension,
            )?;
        }
        if let Some(item) = &self.r#type {
            serde::ser::SerializeMap::serialize_entry(&mut map, "type", item)?;
        }
        serde::ser::SerializeMap::end(map)
    }
}

impl<'de> serde::Deserialize<'de> for GenomicStudyAnalysisOutput {
    fn deserialize<D: serde::Deserializer<'de>>(deserializer: D) -> Result<Self, D::Error> {
        let value = <super::super::codec::Value as serde::Deserialize>::deserialize(deserializer)?;
        let mut path = super::super::codec::Path::root("GenomicStudyAnalysisOutput");
        let object =
            super::super::codec::expect_object(&value, &path).map_err(serde::de::Error::custom)?;
        super::super::codec::Json::from_json(object, &mut path).map_err(serde::de::Error::custom)
    }
}

/// Performer for the analysis event.
#[derive(Debug, Clone, Default, PartialEq, Eq)]
pub struct GenomicStudyAnalysisPerformer {
    /// Unique id for inter-element referencing
    ///
    /// Unique id for the element within a resource (for internal references). This
    /// may be any string value that does not contain spaces.
    pub id: Option<std::string::String>,
    /// Additional content defined by implementations
    ///
    /// May be used to represent additional information that is not part of the
    /// basic definition of the element. To make the use of extensions safe and
    /// managable, there is a strict set of governance applied to the definition and
    /// use of extensions. Though any implementer can define an extension, there is
    /// a set of requirements that SHALL be met as part of the definition of the
    /// extension.
    pub extension: Vec<super::extension::Extension>,
    /// Extensions that cannot be ignored even if unrecognized
    ///
    /// May be used to represent additional information that is not part of the
    /// basic definition of the element and that modifies the understanding of the
    /// element in which it is contained and/or the understanding of the containing
    /// element's descendants. Usually modifier elements provide negation or
    /// qualification. To make the use of extensions safe and managable, there is a
    /// strict set of governance applied to the definition and use of extensions.
    /// Though any implementer can define an extension, there is a set of
    /// requirements that SHALL be met as part of the definition of the extension.
    /// Applications processing a resource are required to check for modifier
    /// extensions. Modifier extensions SHALL NOT change the meaning of any elements
    /// on Resource or DomainResource (including cannot change the meaning of
    /// modifierExtension itself).
    pub modifier_extension: Vec<super::extension::Extension>,
    /// The organization, healthcare professional, or others who participated in
    /// performing this analysis.
    pub actor: Option<super::reference::Reference>,
    /// Role of the actor for this analysis.
    pub role: Option<super::codeable_concept::CodeableConcept>,
}

impl super::super::codec::Json for GenomicStudyAnalysisPerformer {
    fn to_json(&self) -> Result<super::super::codec::Object, super::super::codec::EncodeError> {
        let mut object = super::super::codec::Object::new();
        if let Some(v) = &self.id {
            object.insert(
                std::string::String::from("id"),
                super::super::codec::Value::String(v.clone()),
            );
        }
        if !self.extension.is_empty() {
            let mut items = Vec::with_capacity(self.extension.len());
            for item in &self.extension {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("extension"),
                super::super::codec::Value::Array(items),
            );
        }
        if !self.modifier_extension.is_empty() {
            let mut items = Vec::with_capacity(self.modifier_extension.len());
            for item in &self.modifier_extension {
                items.push(super::super::codec::Value::Object(
                    super::super::codec::Json::to_json(item)?,
                ));
            }
            object.insert(
                std::string::String::from("modifierExtension"),
                super::super::codec::Value::Array(items),
            );
        }
        if let Some(item) = &self.actor {
            object.insert(
                std::string::String::from("actor"),
                super::super::codec::Value::Object(super::super::codec::Json::to_json(item)?),
            );
        }
        if let Some(item) = &self.role {
            object.insert(
                std::string::String::from("role"),
                super::super::codec::Value::Object(super::super::codec::Json::to_json(item)?),
            );
        }
        Ok(object)
    }

    fn from_json(
        object: &super::super::codec::Object,
        path: &mut super::super::codec::Path,
    ) -> Result<Self, super::super::codec::DecodeError> {
        let mut raw_id: Option<&super::super::codec::Value> = None;
        let mut raw_extension: Option<&super::super::codec::Value> = None;
        let mut raw_modifier_extension: Option<&super::super::codec::Value> = None;
        let mut raw_actor: Option<&super::super::codec::Value> = None;
        let mut raw_role: Option<&super::super::codec::Value> = None;
        for (key, value) in object {
            match key.as_str() {
                "id" => {
                    raw_id = Some(value);
                }
                "extension" => {
                    raw_extension = Some(value);
                }
                "modifierExtension" => {
                    raw_modifier_extension = Some(value);
                }
                "actor" => {
                    raw_actor = Some(value);
                }
                "role" => {
                    raw_role = Some(value);
                }
                other => {
                    return path.with(other, |path| {
                        Err(path.error(super::super::codec::DecodeErrorKind::UnknownProperty))
                    });
                }
            }
        }
        let field_id = raw_id
            .map(|value| {
                path.with("id", |path| {
                    let value = super::super::codec::expect_single(value, path)?;
                    super::primitives::checked_string(
                        super::super::codec::expect_string(value, path)?,
                        path,
                    )
                })
            })
            .transpose()?;
        let mut field_extension = Vec::new();
        if let Some(raw) = raw_extension {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_extension.push(path.with_index("extension", index, |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(value, path)?,
                        path,
                    )
                })?);
            }
        }
        let mut field_modifier_extension = Vec::new();
        if let Some(raw) = raw_modifier_extension {
            for (index, value) in super::super::codec::expect_array(raw, path)?
                .iter()
                .enumerate()
            {
                field_modifier_extension.push(path.with_index(
                    "modifierExtension",
                    index,
                    |path| {
                        super::super::codec::Json::from_json(
                            super::super::codec::expect_object(value, path)?,
                            path,
                        )
                    },
                )?);
            }
        }
        let field_actor = raw_actor
            .map(|value| {
                path.with("actor", |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(
                            super::super::codec::expect_single(value, path)?,
                            path,
                        )?,
                        path,
                    )
                })
            })
            .transpose()?;
        let field_role = raw_role
            .map(|value| {
                path.with("role", |path| {
                    super::super::codec::Json::from_json(
                        super::super::codec::expect_object(
                            super::super::codec::expect_single(value, path)?,
                            path,
                        )?,
                        path,
                    )
                })
            })
            .transpose()?;
        Ok(Self {
            id: field_id,
            extension: field_extension,
            modifier_extension: field_modifier_extension,
            actor: field_actor,
            role: field_role,
        })
    }
}

impl serde::Serialize for GenomicStudyAnalysisPerformer {
    fn serialize<S: serde::Serializer>(&self, serializer: S) -> Result<S::Ok, S::Error> {
        let mut map = serde::Serializer::serialize_map(serializer, None)?;
        if let Some(item) = &self.actor {
            serde::ser::SerializeMap::serialize_entry(&mut map, "actor", item)?;
        }
        if !self.extension.is_empty() {
            serde::ser::SerializeMap::serialize_entry(&mut map, "extension", &self.extension)?;
        }
        if let Some(v) = &self.id {
            serde::ser::SerializeMap::serialize_entry(&mut map, "id", v)?;
        }
        if !self.modifier_extension.is_empty() {
            serde::ser::SerializeMap::serialize_entry(
                &mut map,
                "modifierExtension",
                &self.modifier_extension,
            )?;
        }
        if let Some(item) = &self.role {
            serde::ser::SerializeMap::serialize_entry(&mut map, "role", item)?;
        }
        serde::ser::SerializeMap::end(map)
    }
}

impl<'de> serde::Deserialize<'de> for GenomicStudyAnalysisPerformer {
    fn deserialize<D: serde::Deserializer<'de>>(deserializer: D) -> Result<Self, D::Error> {
        let value = <super::super::codec::Value as serde::Deserialize>::deserialize(deserializer)?;
        let mut path = super::super::codec::Path::root("GenomicStudyAnalysisPerformer");
        let object =
            super::super::codec::expect_object(&value, &path).map_err(serde::de::Error::custom)?;
        super::super::codec::Json::from_json(object, &mut path).map_err(serde::de::Error::custom)
    }
}