drprg 0.1.1

Drug resistance prediction with reference graphs
Documentation 
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{
  "genes": {
    "absent": [
      "ahpC",
      "ddn",
      "eis",
      "embA",
      "embB",
      "gid",
      "gyrA",
      "gyrB",
      "inhA",
      "katG",
      "pncA",
      "rplC",
      "rpoB",
      "rpsL",
      "rrs",
      "tlyA"
    ],
    "present": [
      "ethA",
      "fabG1"
    ]
  },
  "sample": "test",
  "susceptibility": {
    "Amikacin": {
      "evidence": [],
      "predict": "S"
    },
    "Capreomycin": {
      "evidence": [],
      "predict": "S"
    },
    "Ciprofloxacin": {
      "evidence": [],
      "predict": "S"
    },
    "Delamanid": {
      "evidence": [],
      "predict": "S"
    },
    "Ethambutol": {
      "evidence": [],
      "predict": "S"
    },
    "Ethionamide": {
      "evidence": [
        {
          "gene": "fabG1",
          "residue": "DNA",
          "variant": "CTG607CTA",
          "vcfid": "0745e4ee"
        }
      ],
      "predict": "R"
    },
    "Isoniazid": {
      "evidence": [
        {
          "gene": "fabG1",
          "residue": "DNA",
          "variant": "CTG607CTA",
          "vcfid": "0745e4ee"
        }
      ],
      "predict": "R"
    },
    "Kanamycin": {
      "evidence": [],
      "predict": "S"
    },
    "Levofloxacin": {
      "evidence": [],
      "predict": "S"
    },
    "Linezolid": {
      "evidence": [],
      "predict": "S"
    },
    "Moxifloxacin": {
      "evidence": [],
      "predict": "S"
    },
    "Ofloxacin": {
      "evidence": [],
      "predict": "S"
    },
    "Pyrazinamide": {
      "evidence": [
        {
          "gene": "pncA",
          "residue": "DNA",
          "variant": "gene_absent",
          "vcfid": ""
        }
      ],
      "predict": "R"
    },
    "Rifampicin": {
      "evidence": [],
      "predict": "S"
    },
    "Streptomycin": {
      "evidence": [],
      "predict": "S"
    }
  },
  "version": {
    "drprg": "0.1.1",
    "index": "version"
  }
}