drprg 0.1.1

Drug resistance prediction with reference graphs
Documentation 
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{
  "genes": {
    "absent": [],
    "present": [
      "ahpC",
      "ddn",
      "eis",
      "embA",
      "embB",
      "ethA",
      "fabG1",
      "gid",
      "gyrA",
      "gyrB",
      "inhA",
      "katG",
      "pncA",
      "rplC",
      "rpoB",
      "rpsL",
      "rrs",
      "tlyA"
    ]
  },
  "sample": "test",
  "susceptibility": {
    "Amikacin": {
      "evidence": [
        {
          "gene": "rrs",
          "residue": "DNA",
          "variant": "A1401X",
          "vcfid": "d7b55751"
        }
      ],
      "predict": "R"
    },
    "Capreomycin": {
      "evidence": [
        {
          "gene": "rrs",
          "residue": "DNA",
          "variant": "A1401X",
          "vcfid": "d7b55751"
        }
      ],
      "predict": "R"
    },
    "Ciprofloxacin": {
      "evidence": [
        {
          "gene": "gyrA",
          "residue": "PROT",
          "variant": "L105R",
          "vcfid": "26586c74"
        },
        {
          "gene": "gyrA",
          "residue": "PROT",
          "variant": "V742L",
          "vcfid": "d79c35a3"
        },
        {
          "gene": "gyrA",
          "residue": "DNA",
          "variant": "C2540T",
          "vcfid": "9a68cf6b"
        }
      ],
      "predict": "U"
    },
    "Delamanid": {
      "evidence": [
        {
          "gene": "ddn",
          "residue": "DNA",
          "variant": "CG527C",
          "vcfid": "b1dde0cf"
        }
      ],
      "predict": "u"
    },
    "Ethambutol": {
      "evidence": [
        {
          "gene": "embB",
          "residue": "PROT",
          "variant": "Q497R",
          "vcfid": "a11d55fb"
        }
      ],
      "predict": "R"
    },
    "Ethionamide": {
      "evidence": [
        {
          "gene": "ethA",
          "residue": "PROT",
          "variant": "S390F",
          "vcfid": "1420f624"
        }
      ],
      "predict": "F"
    },
    "Isoniazid": {
      "evidence": [
        {
          "gene": "katG",
          "residue": "PROT",
          "variant": "S315T",
          "vcfid": "8118e3ec"
        }
      ],
      "predict": "r"
    },
    "Kanamycin": {
      "evidence": [
        {
          "gene": "rrs",
          "residue": "DNA",
          "variant": "A1401X",
          "vcfid": "d7b55751"
        }
      ],
      "predict": "R"
    },
    "Levofloxacin": {
      "evidence": [
        {
          "gene": "gyrA",
          "residue": "PROT",
          "variant": "L105R",
          "vcfid": "26586c74"
        },
        {
          "gene": "gyrA",
          "residue": "PROT",
          "variant": "V742L",
          "vcfid": "d79c35a3"
        },
        {
          "gene": "gyrA",
          "residue": "DNA",
          "variant": "C2540T",
          "vcfid": "9a68cf6b"
        }
      ],
      "predict": "U"
    },
    "Linezolid": {
      "evidence": [],
      "predict": "S"
    },
    "Moxifloxacin": {
      "evidence": [
        {
          "gene": "gyrA",
          "residue": "PROT",
          "variant": "L105R",
          "vcfid": "26586c74"
        },
        {
          "gene": "gyrA",
          "residue": "PROT",
          "variant": "V742L",
          "vcfid": "d79c35a3"
        },
        {
          "gene": "gyrA",
          "residue": "DNA",
          "variant": "C2540T",
          "vcfid": "9a68cf6b"
        }
      ],
      "predict": "U"
    },
    "Ofloxacin": {
      "evidence": [
        {
          "gene": "gyrA",
          "residue": "PROT",
          "variant": "L105R",
          "vcfid": "26586c74"
        },
        {
          "gene": "gyrA",
          "residue": "PROT",
          "variant": "V742L",
          "vcfid": "d79c35a3"
        },
        {
          "gene": "gyrA",
          "residue": "DNA",
          "variant": "C2540T",
          "vcfid": "9a68cf6b"
        }
      ],
      "predict": "U"
    },
    "Pyrazinamide": {
      "evidence": [
        {
          "gene": "pncA",
          "residue": "PROT",
          "variant": "G24D",
          "vcfid": "35faad76"
        }
      ],
      "predict": "R"
    },
    "Rifampicin": {
      "evidence": [
        {
          "gene": "rpoB",
          "residue": "PROT",
          "variant": "S450W",
          "vcfid": "0e1c5bc8"
        }
      ],
      "predict": "R"
    },
    "Streptomycin": {
      "evidence": [
        {
          "gene": "rpsL",
          "residue": "PROT",
          "variant": "K43R",
          "vcfid": "5ce2e9da"
        }
      ],
      "predict": "R"
    }
  },
  "version": {
    "drprg": "0.1.1",
    "index": "version"
  }
}