dnoise 0.1.0

Denoise Bruker timsTOF .d folders with an iterative vertical ion-mobility feature filter (CLI + library).
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
rust-version = "1.85"
name = "dnoise"
version = "0.1.0"
authors = ["Patrick Garrett <pgarrett@scripps.edu>"]
build = false
exclude = [
    "/.github",
    "/dnoise-gui",
]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Denoise Bruker timsTOF .d folders with an iterative vertical ion-mobility feature filter (CLI + library)."
homepage = "https://github.com/pgarrett-scripps/dnoise"
documentation = "https://docs.rs/dnoise"
readme = "README.md"
keywords = [
    "mass-spectrometry",
    "proteomics",
    "timstof",
    "denoising",
    "bruker",
]
categories = [
    "science",
    "command-line-utilities",
]
license = "MIT"
repository = "https://github.com/pgarrett-scripps/dnoise"
resolver = "2"

[package.metadata.docs.rs]
all-features = true
rustdoc-args = [
    "--cfg",
    "docsrs",
]

[features]
cli = [
    "config",
    "dep:anyhow",
    "dep:clap",
    "dep:indicatif",
    "dep:serde_json",
    "dep:tracing-subscriber",
]
config = [
    "dep:serde",
    "dep:toml",
]
default = ["cli"]

[lib]
name = "dnoise"
path = "src/lib.rs"

[[bin]]
name = "dnoise"
path = "src/main.rs"
required-features = ["cli"]

[[example]]
name = "bench_filter"
path = "examples/bench_filter.rs"

[[example]]
name = "cancel_check"
path = "examples/cancel_check.rs"

[[example]]
name = "check_codec"
path = "examples/check_codec.rs"

[[example]]
name = "dump_frame"
path = "examples/dump_frame.rs"

[[example]]
name = "validate"
path = "examples/validate.rs"

[[example]]
name = "zstd_probe"
path = "examples/zstd_probe.rs"

[[test]]
name = "average"
path = "tests/average.rs"

[[test]]
name = "filter"
path = "tests/filter.rs"

[[test]]
name = "halo"
path = "tests/halo.rs"

[[test]]
name = "msms"
path = "tests/msms.rs"

[[test]]
name = "roundtrip"
path = "tests/roundtrip.rs"

[[test]]
name = "streaming"
path = "tests/streaming.rs"

[[test]]
name = "watershed"
path = "tests/watershed.rs"

[dependencies.anyhow]
version = "1.0.102"
optional = true

[dependencies.clap]
version = "4.6.1"
features = ["derive"]
optional = true

[dependencies.indicatif]
version = "0.18.4"
optional = true

[dependencies.rayon]
version = "1.12.0"

[dependencies.rusqlite]
version = "0.32"
features = ["bundled"]

[dependencies.serde]
version = "1.0.228"
features = ["derive"]
optional = true

[dependencies.serde_json]
version = "1.0"
optional = true

[dependencies.thiserror]
version = "2.0.18"

[dependencies.timsrust]
version = "0.4.2"

[dependencies.toml]
version = "1.1.2"
optional = true

[dependencies.tracing]
version = "0.1"

[dependencies.tracing-subscriber]
version = "0.3"
features = ["env-filter"]
optional = true

[dependencies.zstd]
version = "0.13.3"

[profile.profiling]
debug = 2
inherits = "release"

[profile.release]
lto = "thin"
codegen-units = 1