bio_tools 0.1.3

Install, run, and inspect computational biology and chemistry tools, e.g. AlphaFold, Boltz, RFdiffusion3, and ProteinMPNN
Documentation 
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use crate::{
    LaunchType, License, LicenseCategory, ProcessExpense, SpecData, ToolCategory,
    tool_definitions::{
        Tool,
        catalog::{CatalogEntry, Identity},
    },
};

pub const ENTRY: CatalogEntry = CatalogEntry {
    identity: Identity::Installed(Tool::BioPhi),
    categories: &[ToolCategory::AntibodyDesign, ToolCategory::SequenceAnalysis],
    launch_type: LaunchType::PythonBasedApp,
    license_type: LicenseCategory::Permissive,
    expense: ProcessExpense::Moderate,
    primary_output: None,
    primary_inputs: &[],
    top_choice: false,
    spec: SpecData {
        summary: "Humanize antibody sequences or estimate their humanness.",
        description: "Prepares paired antibody FASTA and invokes BioPhi Sapiens or OASis.",
        availability: "Installed by setup_system.sh into its own uv environment",
        license_details: "MIT (Merck). Commercial use is unrestricted.",
        repo_url: Some("https://github.com/Merck/BioPhi"),
        home_url: Some("https://biophi.dichlab.org/"),
        docs_url: None,
        input_params_url: None,
        examples_url: None,
        paper_url: Some("https://doi.org/10.1080/19420862.2021.2020203"),
        license: License::Mit,
        license_url: None,
        tested: false,
    },
};