HandleSequenceStore

compact_genome::implementation::handle_sequence_store

Struct HandleSequenceStore 

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pub struct HandleSequenceStore<AlphabetType, SequenceType, SubsequenceType: ?Sized> { /* private fields */ }
Expand description

A handle-based sequence store.

The sequence store stores nothing, all data is in the handles.

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impl<AlphabetType, SequenceType, SubsequenceType: ?Sized> HandleSequenceStore<AlphabetType, SequenceType, SubsequenceType>

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pub fn new() -> Self

Creates a new instance.

Trait Implementations§

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impl<AlphabetType: Clone, SequenceType: Clone, SubsequenceType: Clone + ?Sized> Clone for HandleSequenceStore<AlphabetType, SequenceType, SubsequenceType>

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fn clone( &self, ) -> HandleSequenceStore<AlphabetType, SequenceType, SubsequenceType>

Returns a duplicate of the value. Read more
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fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more
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impl<AlphabetType: Debug, SequenceType: Debug, SubsequenceType: Debug + ?Sized> Debug for HandleSequenceStore<AlphabetType, SequenceType, SubsequenceType>

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more
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impl<AlphabetType: Default, SequenceType: Default, SubsequenceType: Default + ?Sized> Default for HandleSequenceStore<AlphabetType, SequenceType, SubsequenceType>

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fn default() -> HandleSequenceStore<AlphabetType, SequenceType, SubsequenceType>

Returns the “default value” for a type. Read more
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impl<AlphabetType: PartialEq, SequenceType: PartialEq, SubsequenceType: PartialEq + ?Sized> PartialEq for HandleSequenceStore<AlphabetType, SequenceType, SubsequenceType>

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fn eq( &self, other: &HandleSequenceStore<AlphabetType, SequenceType, SubsequenceType>, ) -> bool

Tests for self and other values to be equal, and is used by ==.
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fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.
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impl<AlphabetType: Alphabet, SequenceType: OwnedGenomeSequence<AlphabetType, SubsequenceType>, SubsequenceType: GenomeSequence<AlphabetType, SubsequenceType> + ?Sized> SequenceStore<AlphabetType> for HandleSequenceStore<AlphabetType, SequenceType, SubsequenceType>

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type Handle = SequenceType

A handle to a sequence in this store. Can be used to retrieve the respective sequence.
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type SequenceRef = SubsequenceType

A reference to a sequence stored in this store. This trait only uses &SequenceRef, so SequenceRef should be the base type and not a reference type itself.
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fn add<Sequence: GenomeSequence<AlphabetType, Subsequence> + ?Sized, Subsequence: GenomeSequence<AlphabetType, Subsequence> + ?Sized>( &mut self, s: &Sequence, ) -> Self::Handle

Adds a sequence to this store and returns a handle for later retrieval. Handles do not borrow the sequence store, so they can exist while the store is modified.
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fn add_from_iter( &mut self, iter: impl IntoIterator<Item = <AlphabetType as Alphabet>::CharacterType>, ) -> Self::Handle

Adds a sequence to this store and returns a handle for later retrieval. Handles do not borrow the sequence store, so they can exist while the store is modified. Read more
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fn add_from_iter_u8<IteratorType: IntoIterator<Item = u8>>( &mut self, iter: IteratorType, ) -> Result<Self::Handle, AlphabetError>

Adds a sequence to this store and returns a handle for later retrieval. Handles do not borrow the sequence store, so they can exist while the store is modified. Read more
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fn get<'this: 'result, 'handle: 'result, 'result>( &'this self, handle: &'handle Self::Handle, ) -> &'result Self::SequenceRef

Returns a reference to a sequence in this store, given the handle. The reference borrows the sequence store, so it cannot be mutated while references exist.
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fn add_from_slice_u8( &mut self, slice: &[u8], ) -> Result<Self::Handle, AlphabetError>

Adds a sequence to this store and returns a handle for later retrieval. Handles do not borrow the sequence store, so they can exist while the store is modified. Read more
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impl<AlphabetType: Eq, SequenceType: Eq, SubsequenceType: Eq + ?Sized> Eq for HandleSequenceStore<AlphabetType, SequenceType, SubsequenceType>

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impl<AlphabetType, SequenceType, SubsequenceType: ?Sized> StructuralPartialEq for HandleSequenceStore<AlphabetType, SequenceType, SubsequenceType>

Auto Trait Implementations§

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impl<AlphabetType, SequenceType, SubsequenceType> Freeze for HandleSequenceStore<AlphabetType, SequenceType, SubsequenceType>
where SubsequenceType: ?Sized,

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impl<AlphabetType, SequenceType, SubsequenceType> RefUnwindSafe for HandleSequenceStore<AlphabetType, SequenceType, SubsequenceType>
where AlphabetType: RefUnwindSafe, SequenceType: RefUnwindSafe, SubsequenceType: RefUnwindSafe + ?Sized,

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impl<AlphabetType, SequenceType, SubsequenceType> Send for HandleSequenceStore<AlphabetType, SequenceType, SubsequenceType>
where AlphabetType: Send, SequenceType: Send, SubsequenceType: Send + ?Sized,

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impl<AlphabetType, SequenceType, SubsequenceType> Sync for HandleSequenceStore<AlphabetType, SequenceType, SubsequenceType>
where AlphabetType: Sync, SequenceType: Sync, SubsequenceType: Sync + ?Sized,

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impl<AlphabetType, SequenceType, SubsequenceType> Unpin for HandleSequenceStore<AlphabetType, SequenceType, SubsequenceType>
where AlphabetType: Unpin, SequenceType: Unpin, SubsequenceType: Unpin + ?Sized,

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impl<AlphabetType, SequenceType, SubsequenceType> UnwindSafe for HandleSequenceStore<AlphabetType, SequenceType, SubsequenceType>
where AlphabetType: UnwindSafe, SequenceType: UnwindSafe, SubsequenceType: UnwindSafe + ?Sized,

Blanket Implementations§

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more
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impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more
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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more
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impl<T> CloneToUninit for T
where T: Clone,

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unsafe fn clone_to_uninit(&self, dest: *mut u8)

🔬This is a nightly-only experimental API. (clone_to_uninit)
Performs copy-assignment from self to dest. Read more
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impl<T> Conv for T

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fn conv<T>(self) -> T
where Self: Into<T>,

Converts self into T using Into<T>. Read more
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impl<T> FmtForward for T

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fn fmt_binary(self) -> FmtBinary<Self>
where Self: Binary,

Causes self to use its Binary implementation when Debug-formatted.
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fn fmt_display(self) -> FmtDisplay<Self>
where Self: Display,

Causes self to use its Display implementation when Debug-formatted.
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fn fmt_lower_exp(self) -> FmtLowerExp<Self>
where Self: LowerExp,

Causes self to use its LowerExp implementation when Debug-formatted.
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fn fmt_lower_hex(self) -> FmtLowerHex<Self>
where Self: LowerHex,

Causes self to use its LowerHex implementation when Debug-formatted.
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fn fmt_octal(self) -> FmtOctal<Self>
where Self: Octal,

Causes self to use its Octal implementation when Debug-formatted.
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fn fmt_pointer(self) -> FmtPointer<Self>
where Self: Pointer,

Causes self to use its Pointer implementation when Debug-formatted.
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fn fmt_upper_exp(self) -> FmtUpperExp<Self>
where Self: UpperExp,

Causes self to use its UpperExp implementation when Debug-formatted.
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fn fmt_upper_hex(self) -> FmtUpperHex<Self>
where Self: UpperHex,

Causes self to use its UpperHex implementation when Debug-formatted.
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fn fmt_list(self) -> FmtList<Self>
where &'a Self: for<'a> IntoIterator,

Formats each item in a sequence. Read more
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impl<T> From<T> for T

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fn from(t: T) -> T

Returns the argument unchanged.

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impl<T, U> Into<U> for T
where U: From<T>,

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fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

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where T: ?Sized,

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fn pipe<R>(self, func: impl FnOnce(Self) -> R) -> R
where Self: Sized,

Pipes by value. This is generally the method you want to use. Read more
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fn pipe_ref<'a, R>(&'a self, func: impl FnOnce(&'a Self) -> R) -> R
where R: 'a,

Borrows self and passes that borrow into the pipe function. Read more
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where R: 'a,

Mutably borrows self and passes that borrow into the pipe function. Read more
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fn pipe_borrow<'a, B, R>(&'a self, func: impl FnOnce(&'a B) -> R) -> R
where Self: Borrow<B>, B: 'a + ?Sized, R: 'a,

Borrows self, then passes self.borrow() into the pipe function. Read more
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where Self: BorrowMut<B>, B: 'a + ?Sized, R: 'a,

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where Self: AsRef<U>, U: 'a + ?Sized, R: 'a,

Borrows self, then passes self.as_ref() into the pipe function.
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where Self: AsMut<U>, U: 'a + ?Sized, R: 'a,

Mutably borrows self, then passes self.as_mut() into the pipe function.
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where Self: Deref<Target = T>, T: 'a + ?Sized, R: 'a,

Borrows self, then passes self.deref() into the pipe function.
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where Self: DerefMut<Target = T> + Deref, T: 'a + ?Sized, R: 'a,

Mutably borrows self, then passes self.deref_mut() into the pipe function.
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impl<T> Tap for T

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fn tap(self, func: impl FnOnce(&Self)) -> Self

Immutable access to a value. Read more
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fn tap_mut(self, func: impl FnOnce(&mut Self)) -> Self

Mutable access to a value. Read more
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fn tap_borrow<B>(self, func: impl FnOnce(&B)) -> Self
where Self: Borrow<B>, B: ?Sized,

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fn tap_borrow_mut<B>(self, func: impl FnOnce(&mut B)) -> Self
where Self: BorrowMut<B>, B: ?Sized,

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where Self: AsRef<R>, R: ?Sized,

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where Self: AsMut<R>, R: ?Sized,

Mutable access to the AsMut<R> view of a value. Read more
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fn tap_deref<T>(self, func: impl FnOnce(&T)) -> Self
where Self: Deref<Target = T>, T: ?Sized,

Immutable access to the Deref::Target of a value. Read more
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fn tap_deref_mut<T>(self, func: impl FnOnce(&mut T)) -> Self
where Self: DerefMut<Target = T> + Deref, T: ?Sized,

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fn tap_dbg(self, func: impl FnOnce(&Self)) -> Self

Calls .tap() only in debug builds, and is erased in release builds.
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fn tap_mut_dbg(self, func: impl FnOnce(&mut Self)) -> Self

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fn tap_borrow_dbg<B>(self, func: impl FnOnce(&B)) -> Self
where Self: Borrow<B>, B: ?Sized,

Calls .tap_borrow() only in debug builds, and is erased in release builds.
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fn tap_borrow_mut_dbg<B>(self, func: impl FnOnce(&mut B)) -> Self
where Self: BorrowMut<B>, B: ?Sized,

Calls .tap_borrow_mut() only in debug builds, and is erased in release builds.
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where Self: AsRef<R>, R: ?Sized,

Calls .tap_ref() only in debug builds, and is erased in release builds.
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fn tap_ref_mut_dbg<R>(self, func: impl FnOnce(&mut R)) -> Self
where Self: AsMut<R>, R: ?Sized,

Calls .tap_ref_mut() only in debug builds, and is erased in release builds.
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fn tap_deref_dbg<T>(self, func: impl FnOnce(&T)) -> Self
where Self: Deref<Target = T>, T: ?Sized,

Calls .tap_deref() only in debug builds, and is erased in release builds.
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fn tap_deref_mut_dbg<T>(self, func: impl FnOnce(&mut T)) -> Self
where Self: DerefMut<Target = T> + Deref, T: ?Sized,

Calls .tap_deref_mut() only in debug builds, and is erased in release builds.
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impl<T> ToOwned for T
where T: Clone,

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type Owned = T

The resulting type after obtaining ownership.
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fn to_owned(&self) -> T

Creates owned data from borrowed data, usually by cloning. Read more
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