Module compact_genome::implementation

Different implementations of genome string representations.

Modules

• bit_vec_sequence
  A representation of a genome as Vec<usize> where each character is encoded as bits.
• bit_vec_sequence_store
  A vector sequence store where each character is encoded as two bits.
• vec_sequence
  A simple representation of a genome as Vec<u8>.
• vec_sequence_store
  An ASCII vector based sequence store.

Type Definitions

• DefaultGenome
  The default genome type that achieves a good balance between speed and size.
• DefaultSequenceStore
  The default genome sequence store type that achieves a good balance between speed and size.
• DefaultSequenceStoreHandle
  The handle type of the default genome sequence store type.
• DefaultSubGenome
  The default genome subsequence type that achieves a good balance between speed and size.