Trait Matrix 

pub trait Matrix {
    const NULL: u8;

    // Required methods
    fn new() -> Self;
    fn set(&mut self, a: u8, b: u8, score: i8);
    fn get(&self, a: u8, b: u8) -> i8;
    fn as_ptr(&self, i: usize) -> *const i8;
    unsafe fn get_scores(&self, c: u8, v: HalfSimd, right: bool) -> Simd;
    fn convert_char(c: u8) -> u8;
}

Required Associated Constants

const NULL: u8

Byte to use as padding.

Required Methods

fn new() -> Self

Create a new matrix with default (usually nonsense) values.

Use new_simple to create a sensible scoring matrix.

fn set(&mut self, a: u8, b: u8, score: i8)

Set the score for a pair of bytes.

fn get(&self, a: u8, b: u8) -> i8

Get the score for a pair of bytes.

fn as_ptr(&self, i: usize) -> *const i8

Get the pointer for a specific index.

unsafe fn get_scores(&self, c: u8, v: HalfSimd, right: bool) -> Simd

Get the scores for a certain byte and a certain SIMD vector of bytes.

fn convert_char(c: u8) -> u8

Convert a byte to a better storage format that makes retrieving scores easier.

Dyn Compatibility

This trait is not dyn compatible.

In older versions of Rust, dyn compatibility was called "object safety".

Implementors

impl Matrix for AAMatrix

const NULL: u8

impl Matrix for ByteMatrix

const NULL: u8 = b'\0'

impl Matrix for NucMatrix

const NULL: u8 = b'Z'