Module block_aligner::scores

Structs for representing match/mismatch scoring matrices.

Structs

• AAMatrix
  Amino acid scoring matrix.
• AAProfile
  Amino acid position specific scoring matrix.
• ByteMatrix
  Arbitrary bytes scoring matrix.
• Gaps
  Open and extend gap costs.
• NucMatrix
  Nucleotide scoring matrix.

Statics

• BLOSUM45
• BLOSUM50
• BLOSUM62
• BLOSUM80
• BLOSUM90
• BYTES1
  Match = 1, mismatch = -1.
• NW1
  Match = 1, mismatch = -1.
• PAM100
• PAM120
• PAM160
• PAM200
• PAM250

Traits

• Matrix
• Profile