Struct BarcodeRegex 

pub struct BarcodeRegex { /* private fields */ }

Implementations

impl BarcodeRegex

pub fn new(pattern: &str, max_error: usize) -> Result<Self, Error>

Creates BarcodeRegex instance

Example

use barkit_extract::pattern::BarcodeRegex;

let barcode_regex = BarcodeRegex::new("^atgc(?<UMI>[ATGCN]{6})", 1);

pub fn get_captures<'a>( &self, read_seq: &'a [u8], ) -> Result<Captures<'a>, Error>

Captures barcodes in read sequence

Example

use barkit_extract::pattern::BarcodeRegex;

let barcode_regex = BarcodeRegex::new("^atgc(?<UMI>[ATGCN]{6})", 1).unwrap();

assert_eq!(
    b"NNNNNN",
    barcode_regex
        .get_captures(b"ATGCNNNNNNCCC")
        .unwrap()
        .name("UMI")
        .unwrap()
        .as_bytes()
);

pub fn get_barcode_types(&self) -> Vec<BarcodeType>

Trait Implementations

impl Clone for BarcodeRegex

fn clone(&self) -> BarcodeRegex

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.