List of all items
Structs
- classifier::ArgPosition
- classifier::FlankingDatabase
- classifier::FlankingRecord
- classifier::GenusClassifier
- classifier::GenusResult
- extender::ContigExtender
- extender::ExtendedContig
- extender::ExtenderConfig
- fdb::FlankingRecord
- flanking_db::AssemblyInfo
- flanking_db::BuildState
- flanking_db::CatalogEntry
- flanking_db::FlankBuildConfig
- flanking_db::FlankingDbBuilder
- flanking_db::GenomeCatalog
- flanking_db::PlasmidInfo
- flanking_db::PlsdbOptions
- flanking_db::TaxonomyDB
- flanking_db_ntprok::NtProkConfig
- flanking_db_ntprok::TaxonomyDb
- paf::PafReader
- paf::PafRecord
- reassemble::ReasmConfig
- reassemble::StalledLocus
- reassemble::StitchedContig
- reassemble::StitchedLocus
- seqio::FastaReader
- seqio::FastaRecord
- seqio::FastqReader
- seqio::FastqRecord
- snp::SnpInfo
Enums
Functions
- arg_db::build
- arg_db::build_flanking_db
- arg_db::build_from_unified
- extender::write_extended_contigs
- fdb::build
- fdb::build_from_sorted
- flanking_db::build
- flanking_db_ntprok::build
- flanking_db_ntprok::ensure_taxdump
- flanking_db_ntprok::validate_arg_db_format
- reassemble::reassemble_stalled
- snp::is_snp_gene
- snp::parse_snp_info
- snp::translate_codon
- snp::verify_snp