Struct TaxonomyDB

Source

pub struct TaxonomyDB { /* private fields */ }

Expand description

NCBI Taxonomy database for taxid → genus lookup Parses names.dmp and nodes.dmp from taxdump

Implementations§

Source §

impl TaxonomyDB

Source

pub fn new() -> Self

Source

pub fn load(taxdump_dir: &Path) -> Result<Self>

Load taxonomy from taxdump directory

Source

pub fn get_genus(&self, taxid: u32) -> Option<String>

Get genus name for a taxid by traversing up the tree

Source

pub fn get_genus_or_higher(&self, taxid: u32) -> Option<(String, String)>

Get genus or higher rank (family, order, class) if genus not found Returns (name, rank) tuple

Trait Implementations§

Source §

impl Default for TaxonomyDB

Source §

fn default() -> Self

Returns the “default value” for a type. Read more

Auto Trait Implementations§

§

impl UnwindSafe for TaxonomyDB

Blanket Implementations§

Source §

impl<T> Any for T
where T: 'static + ?Sized,

Source §

fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more

Source §

impl<T> Borrow<T> for T
where T: ?Sized,

Source §

fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more

Source §

impl<T> BorrowMut<T> for T
where T: ?Sized,

Source §

fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more

Source §

impl<T> From<T> for T

Source §

fn from(t: T) -> T

Returns the argument unchanged.

Source §

impl<T, U> Into for T
where U: From<T>,

Source §

fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

Source §

impl<T> IntoEither for T

Source §

fn into_either(self, into_left: bool) -> Either<Self, Self>

Converts self into a Left variant of Either<Self, Self> if into_left is true. Converts self into a Right variant of Either<Self, Self> otherwise. Read more

Source §

fn into_either_with<F>(self, into_left: F) -> Either<Self, Self>
where F: FnOnce(&Self) -> bool,

Converts self into a Left variant of Either<Self, Self> if into_left(&self) returns true. Converts self into a Right variant of Either<Self, Self> otherwise. Read more

Source §