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StalledLocus

argenus::reassemble

Struct StalledLocus 

Source 
pub struct StalledLocus {
    pub key: String,
    pub arg_name: String,
    pub arg_class: String,
    pub identity: f64,
    pub coverage: f64,
    pub gene_seq: String,
    pub seed_seq: String,
}
Expand description

A stalled locus to reassemble: the ARG gene region plus the whole strict contig (used as the orientation seed when stitching).

Fields§

§key: String

Unique key, arg_name:contig — also the output name prefix.

§arg_name: String§arg_class: String§identity: f64§coverage: f64§gene_seq: String

ARG gene sequence (substring of the contig).

§seed_seq: String

Whole strict contig sequence (orientation seed).

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