Trait CodonExtension 

pub trait CodonExtension {
    // Required methods
    fn is_std_stop_codon(&self) -> bool;
    fn maybe_std_stop_codon(&self) -> bool;
    fn is_amino_acid(&self) -> bool;
    fn is_resolvable_codon(&self) -> bool;
    fn is_partial_codon(&self) -> bool;
}

Extension trait for codon-like objects ([u8; 3] in Zoe) providing common classification methods.

Required Methods

fn is_std_stop_codon(&self) -> bool

Returns true if the codon is a standard stop codon (TAA, TAG, TGA, or RNA equivalents including some ambiguous forms).

fn maybe_std_stop_codon(&self) -> bool

Returns true if the codon potentially codes for a standard stop codon.

This returns true for unresolvable codons such as TGR which could be a stop codon. NNN also returns true.

fn is_amino_acid(&self) -> bool

Returns true if the codon translates to an amino acid.

Ambiguous codons are supported, but they must unambiguously translate to an amino acid in order to return true. Stop codons, partial codons, deletions (e.g., ---), and the ambiguous codon NNN all return false.

fn is_resolvable_codon(&self) -> bool

Returns true if the codon can be resolved to a translation (amino acid, deletion, missing codon, or stop codon) under the standard genetic code.

fn is_partial_codon(&self) -> bool

Returns true if the codon is partial, meaning that it contains one or two gaps (- or .).

Dyn Compatibility

This trait is dyn compatible.

In older versions of Rust, dyn compatibility was called "object safety".

Implementations on Foreign Types

impl CodonExtension for [u8; 3]

fn is_std_stop_codon(&self) -> bool

fn maybe_std_stop_codon(&self) -> bool

fn is_amino_acid(&self) -> bool

fn is_resolvable_codon(&self) -> bool

fn is_partial_codon(&self) -> bool

Implementors