Struct ReadBatch 

pub struct ReadBatch { /* private fields */ }

A batch of paired-end reads to map.

All slices must have the same length (count). Sequences are ASCII DNA strings (ACGTN) and qualities are phred+33 ASCII strings.

Implementations

impl ReadBatch

pub fn new() -> Self

Create a new empty batch.

pub fn with_capacity(n: usize) -> Self

Create a batch with pre-allocated capacity for n pairs.

pub fn push( &mut self, name: &str, r1: ReadEnd<'_>, r2: ReadEnd<'_>, ) -> Result<(), YaraError>

Add a read pair to the batch.

Errors

Returns YaraError::InvalidInput if any input contains a null byte or if sequence and quality lengths do not match.

pub fn len(&self) -> usize

Number of read pairs in the batch.

pub fn is_empty(&self) -> bool

Whether the batch is empty.

pub fn clear(&mut self)

Clear all reads, retaining allocated capacity for reuse.

Trait Implementations

impl Default for ReadBatch

fn default() -> ReadBatch

Returns the “default value” for a type.