Struct VCFRecord 

pub struct VCFRecord {
    pub chromosome: U8Vec,
    pub position: u64,
    pub id: Vec<U8Vec>,
    pub reference: U8Vec,
    pub alternative: Vec<U8Vec>,
    pub qual: Option<f64>,
    pub filter: Vec<U8Vec>,
    pub info: Vec<(U8Vec, Vec<U8Vec>)>,
    pub format: Vec<U8Vec>,
    pub genotype: Vec<Vec<Vec<U8Vec>>>,
    /* private fields */
}

Fields

chromosome: U8Vec

position: u64

id: Vec<U8Vec>

reference: U8Vec

alternative: Vec<U8Vec>

qual: Option<f64>

filter: Vec<U8Vec>

info: Vec<(U8Vec, Vec<U8Vec>)>

format: Vec<U8Vec>

genotype: Vec<Vec<Vec<U8Vec>>>

Implementations

impl VCFRecord

pub fn new(header: VCFHeader) -> Self

pub fn from_bytes( line: &[u8], line_num: u64, header: VCFHeader, ) -> Result<Self, VCFError>

pub fn parse_bytes( &mut self, line: &[u8], line_num: u64, ) -> Result<(), VCFError>

pub fn header(&self) -> &VCFHeader

pub fn info(&self, key: &[u8]) -> Option<&Vec<U8Vec>>

pub fn info_mut(&mut self, key: &[u8]) -> Option<&mut Vec<U8Vec>>

pub fn insert_info( &mut self, key: &[u8], values: Vec<U8Vec>, ) -> Option<Vec<U8Vec>>

pub fn genotype(&self, sample_name: &[u8], key: &[u8]) -> Option<&Vec<U8Vec>>

pub fn genotype_mut( &mut self, sample_name: &[u8], key: &[u8], ) -> Option<&mut Vec<U8Vec>>

pub fn insert_genotype( &mut self, sample_name: &[u8], key: &[u8], values: Vec<U8Vec>, ) -> Option<Vec<U8Vec>>

pub fn recreate_info_and_genotype_index(&mut self)

Recreate info and genotype index cache. Please call this method if you modify info and format field manually.

impl VCFRecord

pub fn write_record<W: Write>(&self, writer: W) -> Result<()>

Trait Implementations

impl Clone for VCFRecord

fn clone(&self) -> VCFRecord

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for VCFRecord

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl PartialEq for VCFRecord

fn eq(&self, other: &VCFRecord) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl StructuralPartialEq for VCFRecord